miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00647;MIR164;BABK01001893.1/4565-4271 34305:Lotus japonicus
Length = 295
Score = 75.8 bits (38), Expect = 2e-13
Identities = 41/42 (97%)
Strand = Plus / Plus
Query: 137 cagtgagttagtccttcatgtgcccctcttccccatcatgac 178
|||||||||||| |||||||||||||||||||||||||||||
Sbjct: 251 cagtgagttagtgcttcatgtgcccctcttccccatcatgac 292
Score = 67.9 bits (34), Expect = 5e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 21 caagatggagaagcagggcacgtgcaattctaactcat 58
|||||||||||||||||||||||||||| |||||||||
Sbjct: 6 caagatggagaagcagggcacgtgcaatgctaactcat 43
>RF00647;MIR164;BABK01024863.1/539-828 34305:Lotus japonicus
Length = 290
Score = 71.9 bits (36), Expect = 3e-12
Identities = 42/44 (95%)
Strand = Plus / Plus
Query: 135 tgcagtgagttagtccttcatgtgcccctcttccccatcatgac 178
|||||| ||||||| |||||||||||||||||||||||||||||
Sbjct: 244 tgcagtaagttagtacttcatgtgcccctcttccccatcatgac 287
Score = 61.9 bits (31), Expect = 3e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 20 gcaagatggagaagcagggcacgtgcaattctaactcat 58
|||||||||||||||||||||||||||| |||||||||
Sbjct: 5 gcaagatggagaagcagggcacgtgcaacactaactcat 43
>RF00647;MIR164;AC150384.17/72119-72271 3880:Medicago truncatula
(barrel medic)
Length = 153
Score = 69.9 bits (35), Expect = 1e-11
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 140 tgagttagtccttcatgtgcccctcttccccatcatgac 178
||||||||| |||||||||||||||||||||||||||||
Sbjct: 112 tgagttagttcttcatgtgcccctcttccccatcatgac 150
Score = 67.9 bits (34), Expect = 5e-11
Identities = 37/38 (97%)
Strand = Plus / Plus
Query: 21 caagatggagaagcagggcacgtgcaattctaactcat 58
|||||||||||||||||||||||||||| |||||||||
Sbjct: 6 caagatggagaagcagggcacgtgcaatactaactcat 43
>RF00647;MIR164;BABK01023841.1/800-898 34305:Lotus japonicus
Length = 99
Score = 69.9 bits (35), Expect = 1e-11
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 24 gatggagaagcagggcacgtgcaattctaactcatcaac 62
||||||||||||||||||||||||| |||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgcaatgctaactcatcaac 47
Score = 58.0 bits (29), Expect = 5e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 138 agtgagttagtccttcatgtgcccctcttccccatcatgac 178
||||||||| | ||||||||||||||||||||||||||||
Sbjct: 56 agtgagttaacctttcatgtgcccctcttccccatcatgac 96
>RF00647;MIR164;EU421160.1/170-25 29780:Mangifera indica (mango)
Length = 146
Score = 61.9 bits (31), Expect = 3e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 20 gcaagatggagaagcagggcacgtgcaattctaactcat 58
||||||||||||||||||||||||||| | |||||||||
Sbjct: 5 gcaagatggagaagcagggcacgtgcattactaactcat 43
Score = 54.0 bits (27), Expect = 7e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 140 tgagttagtccttcatgtgcccctcttccccatcatgac 178
||||||||| ||||||||||| ||||||||||||||||
Sbjct: 105 tgagttagtttttcatgtgcccatcttccccatcatgac 143
>RF00647;MIR164;ABIM01008908.1/593-707 3649:Carica papaya (papaya)
Length = 115
Score = 61.9 bits (31), Expect = 3e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 20 gcaagatggagaagcagggcacgtgcaattctaactcat 58
||||||||||||||||||||||||||| | |||||||||
Sbjct: 5 gcaagatggagaagcagggcacgtgcattactaactcat 43
Score = 61.9 bits (31), Expect = 3e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 140 tgagttagtccttcatgtgcccctcttccccatcatgac 178
||||||||| |||||||||||| ||||||||||||||||
Sbjct: 74 tgagttagttcttcatgtgcccgtcttccccatcatgac 112
>RF00647;MIR164;AARH01006944.1/110052-110208 3694:Populus
trichocarpa
Length = 157
Score = 61.9 bits (31), Expect = 3e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 20 gcaagatggagaagcagggcacgtgcaattctaactcat 58
||||||||||||||||||||||||||| | |||||||||
Sbjct: 5 gcaagatggagaagcagggcacgtgcattactaactcat 43
Score = 50.1 bits (25), Expect = 1e-05
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 141 gagttagtccttcatgtgcccctcttccccatcatga 177
|||||||| ||||||||||| |||||||||||||||
Sbjct: 117 gagttagttcttcatgtgcctgtcttccccatcatga 153
>RF00647;MIR164;AASG02020922.1/1372-1495 3988:Ricinus communis
(castor bean)
Length = 124
Score = 61.9 bits (31), Expect = 3e-09
Identities = 37/39 (94%)
Strand = Plus / Plus
Query: 20 gcaagatggagaagcagggcacgtgcaattctaactcat 58
||||||||||||||||||||||||||| | |||||||||
Sbjct: 5 gcaagatggagaagcagggcacgtgcattactaactcat 43
Score = 56.0 bits (28), Expect = 2e-07
Identities = 34/36 (94%)
Strand = Plus / Plus
Query: 143 gttagtccttcatgtgcccctcttccccatcatgac 178
|||||| |||||||||||| ||||||||||||||||
Sbjct: 86 gttagttcttcatgtgcccgtcttccccatcatgac 121
>RF00647;MIR164;CAAP02000884.1/12240-12399 29760:Vitis vinifera
Length = 160
Score = 60.0 bits (30), Expect = 1e-08
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 141 gagttagtccttcatgtgcccctcttccccatcatgac 178
||||| || |||||||||||||||||||||||||||||
Sbjct: 120 gagttggttcttcatgtgcccctcttccccatcatgac 157
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 20 gcaagatggagaagcagggcacgtgca 46
|||||||||||||||||||||||||||
Sbjct: 5 gcaagatggagaagcagggcacgtgca 31
>RF00647;MIR164;FM163716.1/40-210 3702:Arabidopsis thaliana (thale
cress)
Length = 171
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 20 gcaagatggagaagcagggcacgtgca 46
|||||||||||||||||||||||||||
Sbjct: 5 gcaagatggagaagcagggcacgtgca 31
Score = 54.0 bits (27), Expect = 7e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 140 tgagttagtccttcatgtgcccctcttccccatcatgac 178
||||||||| |||||||||||| ||||| ||||||||||
Sbjct: 130 tgagttagttcttcatgtgcccatcttcaccatcatgac 168
>RF00647;MIR164;FM163713.1/40-209 3702:Arabidopsis thaliana (thale
cress)
Length = 170
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 20 gcaagatggagaagcagggcacgtgca 46
|||||||||||||||||||||||||||
Sbjct: 5 gcaagatggagaagcagggcacgtgca 31
Score = 54.0 bits (27), Expect = 7e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 140 tgagttagtccttcatgtgcccctcttccccatcatgac 178
||||||||| |||||||||||| ||||| ||||||||||
Sbjct: 129 tgagttagttcttcatgtgcccatcttcaccatcatgac 167
>RF00647;MIR164;EU548743.1/136-304 3702:Arabidopsis thaliana
(thale cress)
Length = 169
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 20 gcaagatggagaagcagggcacgtgca 46
|||||||||||||||||||||||||||
Sbjct: 5 gcaagatggagaagcagggcacgtgca 31
Score = 54.0 bits (27), Expect = 7e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 140 tgagttagtccttcatgtgcccctcttccccatcatgac 178
||||||||| |||||||||||| ||||| ||||||||||
Sbjct: 128 tgagttagttcttcatgtgcccatcttcaccatcatgac 166
>RF00647;MIR164;AY728403.1/144-291 3694:Populus trichocarpa
Length = 148
Score = 54.0 bits (27), Expect = 7e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 24 gatggagaagcagggcacgtgcaattctaactcat 58
||||||||||||||||||||||| | |||||||||
Sbjct: 1 gatggagaagcagggcacgtgcactactaactcat 35
>RF00647;MIR164;FM162586.1/101-259 3451:Aquilegia vulgaris
Length = 159
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 20 gcaagatggagaagcagggcacgtgca 46
|||||||||||||||||||||||||||
Sbjct: 5 gcaagatggagaagcagggcacgtgca 31
>RF00647;MIR164;FM162587.1/172-265 310672:Cabomba aquatica
Length = 94
Score = 54.0 bits (27), Expect = 7e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 20 gcaagatggagaagcagggcacgtgca 46
|||||||||||||||||||||||||||
Sbjct: 5 gcaagatggagaagcagggcacgtgca 31
Score = 46.1 bits (23), Expect = 2e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 144 ttagtccttcatgtgcccctcttccccatcatgac 178
||||| ||||||||||||||||| ||||||||||
Sbjct: 57 ttagttcttcatgtgcccctcttttccatcatgac 91
>RF00647;MIR164;AASG02000861.1/36470-36555 3988:Ricinus communis
(castor bean)
Length = 86
Score = 50.1 bits (25), Expect = 1e-05
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 26 tggagaagcagggcacgtgcaattc 50
|||||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaattc 35
>RF00647;MIR164;DQ090016.1/221-315 13451:Corylus avellana
Length = 95
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 26 tggagaagcagggcacgtgcaat 48
|||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaat 33
>RF00647;MIR164;AM449363.2/29982-30065 29760:Vitis vinifera
Length = 84
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 gatggagaagcagggcacgtgca 46
|||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgca 31
>RF00647;MIR164;FM162590.1/70-202 13333:Amborella trichopoda
Length = 133
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 24 gatggagaagcagggcacgtgca 46
|||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgca 31
>RF00647;MIR164;ABIM01003254.1/2406-2491 3649:Carica papaya
(papaya)
Length = 86
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 26 tggagaagcagggcacgtgcaa 47
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
>RF00647;MIR164;ABIM01024497.1/24000-24085 3649:Carica papaya
(papaya)
Length = 86
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 26 tggagaagcagggcacgtgcaa 47
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
>RF00647;MIR164;EU548763.1/160-261 3702:Arabidopsis thaliana
(thale cress)
Length = 102
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 24 gatggagaagcagggcacgtgc 45
||||||||||||||||||||||
Sbjct: 9 gatggagaagcagggcacgtgc 30
>RF00647;MIR164;EU548715.1/244-341 3702:Arabidopsis thaliana
(thale cress)
Length = 98
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 26 tggagaagcagggcacgtgcaa 47
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
>RF00647;MIR164;AY871042.1/1-85 3694:Populus trichocarpa
Length = 85
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 26 tggagaagcagggcacgtgcaa 47
||||||||||||||||||||||
Sbjct: 3 tggagaagcagggcacgtgcaa 24
>RF00647;MIR164;AARH01005550.1/339945-339862 3694:Populus
trichocarpa
Length = 84
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 26 tggagaagcagggcacgtgcaa 47
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
>RF00647;MIR164;AY728400.1/2-73 3694:Populus trichocarpa
Length = 72
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 26 tggagaagcagggcacgtgcaa 47
||||||||||||||||||||||
Sbjct: 3 tggagaagcagggcacgtgcaa 24
>RF00647;MIR164;AASG02000423.1/48609-48498 3988:Ricinus communis
(castor bean)
Length = 112
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 26 tggagaagcagggcacgtgcaa 47
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
>RF00647;MIR164;AC167403.2/113120-113214 3880:Medicago truncatula
(barrel medic)
Length = 95
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 26 tggagaagcagggcacgtgcaa 47
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
>RF00647;MIR164;AC235335.1/132786-132675 3847:Glycine max
(soybean)
Length = 112
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 26 tggagaagcagggcacgtgcaa 47
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
>RF00647;MIR164;FM162585.1/105-191 3451:Aquilegia vulgaris
Length = 87
Score = 44.1 bits (22), Expect = 7e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 26 tggagaagcagggcacgtgcaa 47
||||||||||||||||||||||
Sbjct: 11 tggagaagcagggcacgtgcaa 32
