miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
(papaya)
Length = 91
Score = 89.7 bits (45), Expect = 8e-18
Identities = 82/92 (89%), Gaps = 3/92 (3%)
Strand = Plus / Plus
Query: 19 cactggaggcagcggttcatcgatctcttcct--gaatttggctgtggaagaacacaaag 76
|||||||||||||||||||||||||||||||| |||||||| |||| || | |||| |
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctgggaatttgg-tgtgaaaaatcacagaa 59
Query: 77 caagaatcggtcgataaacctctgcatccagc 108
|| |||||| ||||||||||||||||||||||
Sbjct: 60 catgaatcgatcgataaacctctgcatccagc 91
>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
Length = 88
Score = 83.8 bits (42), Expect = 5e-16
Identities = 80/90 (88%), Gaps = 2/90 (2%)
Strand = Plus / Plus
Query: 19 cactggaggcagcggttcatcgatctcttcctgaatttggctgtggaagaacacaaagca 78
||||||| ||||||||||||||||||||||||||| ||| |||| || || || | ||
Sbjct: 1 cactggatgcagcggttcatcgatctcttcctgaaattgt-tgtgaaaaaag-cagatca 58
Query: 79 agaatcggtcgataaacctctgcatccagc 108
||||||||||||||||||||||||||||||
Sbjct: 59 agaatcggtcgataaacctctgcatccagc 88
>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
trichocarpa
Length = 91
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 19 cactggaggcagcggttcatcgatctcttcctg 51
|||||||||||||||||||||||||||||||||
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctg 33
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 87 tcgataaacctctgcatccagc 108
||||||||||||||||||||||
Sbjct: 70 tcgataaacctctgcatccagc 91
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
(castor bean)
Length = 96
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 19 cactggaggcagcggttcatcgatctcttcctg 51
|||||||||||||||||||||||||||||||||
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctg 33
>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
(thale cress)
Length = 91
Score = 63.9 bits (32), Expect = 5e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 73 aaagcaagaatcggtcgataaacctctgcatccagc 108
||||||||||||| ||||||||||||||||||||||
Sbjct: 56 aaagcaagaatcgatcgataaacctctgcatccagc 91
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 ctggaggcagcggttcatcgatc 43
|||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatc 25
>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 21 ctggaggcagcggttcatcgatctcttcctg 51
|||||||||||||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctg 33
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 73 aaagcaagaatcggtcgataaacctctgcatccagc 108
|||||| |||| | ||||||||||||||||||||||
Sbjct: 53 aaagcatgaatagatcgataaacctctgcatccagc 88
>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
Length = 91
Score = 61.9 bits (31), Expect = 2e-09
Identities = 34/35 (97%)
Strand = Plus / Plus
Query: 19 cactggaggcagcggttcatcgatctcttcctgaa 53
|||||||||||||||||||||||||| ||||||||
Sbjct: 1 cactggaggcagcggttcatcgatcttttcctgaa 35
>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
(barrel medic)
Length = 90
Score = 61.9 bits (31), Expect = 2e-09
Identities = 78/91 (85%), Gaps = 2/91 (2%)
Strand = Plus / Plus
Query: 19 cactggaggcagcggttcatcgatctcttcctgaa-tttggctgtggaagaacacaaagc 77
||||||| |||||||||||||||||| |||||||| |||| ||| || ||||| |
Sbjct: 1 cactggatgcagcggttcatcgatctgttcctgaattttgtttgtctcgtaaaacaaa-c 59
Query: 78 aagaatcggtcgataaacctctgcatccagc 108
| |||||||||||||||||||||||||||||
Sbjct: 60 atgaatcggtcgataaacctctgcatccagc 90
>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
Length = 133
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 80 gaatcggtcgataaacctctgcatccagc 108
|||||||||||||||||||||||||||||
Sbjct: 105 gaatcggtcgataaacctctgcatccagc 133
>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
(sorghum)
Length = 132
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 80 gaatcggtcgataaacctctgcatccagc 108
|||||| ||||||||||||||||||||||
Sbjct: 104 gaatcgatcgataaacctctgcatccagc 132
>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
Group
Length = 158
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 80 gaatcggtcgataaacctctgcatccag 107
|||||| |||||||||||||||||||||
Sbjct: 130 gaatcgatcgataaacctctgcatccag 157
>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
Indica Group
Length = 159
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 80 gaatcggtcgataaacctctgcatccag 107
|||||| |||||||||||||||||||||
Sbjct: 131 gaatcgatcgataaacctctgcatccag 158
>RF00742;MIR162_2;AC189332.2/56556-56647 51351:Brassica rapa
subsp. pekinensis
Length = 92
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 21 ctggaggcagcggttcatcgatctctt 47
||||||||||||||| |||||||||||
Sbjct: 3 ctggaggcagcggttgatcgatctctt 29
