miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00445;mir-399;AC155803.26/43739-43832 3880:Medicago truncatula
(barrel medic)
Length = 94
Score = 73.8 bits (37), Expect = 3e-13
Identities = 71/81 (87%), Gaps = 1/81 (1%)
Strand = Plus / Plus
Query: 10 atagggcttctctttgttggcaggaaatga-catgatcatctcatgaaatatcttgccaa 68
||||||||||||||| |||||||||||| | ||||| ||| ||| | | |||||||||
Sbjct: 10 atagggcttctctttcttggcaggaaattatcatgaccattccatcatgtgtcttgccaa 69
Query: 69 aggagagttgccctgttgctg 89
|||||||||||||||||||||
Sbjct: 70 aggagagttgccctgttgctg 90
>RF00445;mir-399;AP007308.2/25934-26026 34305:Lotus japonicus
Length = 93
Score = 65.9 bits (33), Expect = 8e-11
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 60 tcttgccaaaggagagttgccctgttgctgctt 92
|||||||||||||||||||||||||||||||||
Sbjct: 60 tcttgccaaaggagagttgccctgttgctgctt 92
>RF00445;mir-399;BABK01105304.1/403-505 34305:Lotus japonicus
Length = 103
Score = 56.0 bits (28), Expect = 8e-08
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 61 cttgccaaaggagagttgccctgttgctgctt 92
|||||||||||||||||||||||| |||||||
Sbjct: 71 cttgccaaaggagagttgccctgtggctgctt 102
>RF00445;mir-399;DQ063659.1/70-185 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 61 cttgccaaaggagagttgccctgt 84
||||||||||||||||||||||||
Sbjct: 83 cttgccaaaggagagttgccctgt 106
>RF00445;mir-399;ABXC01004408.1/291013-291114 4558:Sorghum bicolor
(sorghum)
Length = 102
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 63 tgccaaaggagagttgccctgt 84
||||||||||||||||||||||
Sbjct: 72 tgccaaaggagagttgccctgt 93
