miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00017;Metazoa_SRP;AACZ02112558.1/5910-6203 9598:Pan troglodytes
(chimpanzee)
Length = 294
Score = 56.0 bits (28), Expect = 2e-07
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 93 caggaggatcccttgagcccaggaatttgaagccaccctgggcaacatagggagacatca 152
||||| ||||||||||| |||||| ||||| ||| ||||||||| |||| ||||| |||
Sbjct: 229 caggaagatcccttgaggccaggagtttgagaccagcctgggcaatatagcgagacctca 288
Query: 153 tctc 156
||||
Sbjct: 289 tctc 292
>RF00017;Metazoa_SRP;AL358612.9/35723-35431 9606:Homo sapiens
(human)
Length = 293
Score = 56.0 bits (28), Expect = 2e-07
Identities = 55/64 (85%)
Strand = Plus / Plus
Query: 93 caggaggatcccttgagcccaggaatttgaagccaccctgggcaacatagggagacatca 152
||||| ||||||||||| |||||| ||||| ||| ||||||||| |||| ||||| |||
Sbjct: 228 caggaagatcccttgaggccaggagtttgagaccagcctgggcaatatagcgagacctca 287
Query: 153 tctc 156
||||
Sbjct: 288 tctc 291
>RF00017;Metazoa_SRP;ABDC01020557.1/1337-1639 30608:Microcebus
murinus (gray mouse lemur)
Length = 303
Score = 52.0 bits (26), Expect = 3e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 93 caggaggatcccttgagcccaggaatttga 122
|||||||||||||||||||||||| |||||
Sbjct: 52 caggaggatcccttgagcccaggagtttga 81
>RF00017;Metazoa_SRP;AADD01037841.1/13600-13316 9606:Homo sapiens
(human)
Length = 285
Score = 50.1 bits (25), Expect = 1e-05
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 34 actcaggctggaatgcactggcatggtcatacctcactgcggcctcaaactgctgggctc 93
|||||||||||| |||| ||| | | | ||| |||||||| |||||||||| ||||||||
Sbjct: 262 actcaggctggagtgcagtggtaggatgatagctcactgcagcctcaaactcctgggctc 203
Query: 94 a 94
|
Sbjct: 202 a 202
>RF00017;Metazoa_SRP;CABD01078080.1/855-1201 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 347
Score = 50.1 bits (25), Expect = 1e-05
Identities = 49/57 (85%)
Strand = Plus / Minus
Query: 37 caggctggaatgcactggcatggtcatacctcactgcggcctcaaactgctgggctc 93
||||||||| |||| || |||| ||||| |||||| ||||||||||| ||||||||
Sbjct: 121 caggctggagtgcagtgacatgttcatagttcactgtggcctcaaactcctgggctc 65
>RF00017;Metazoa_SRP;ABVD01469832.1/1793-1505 9358:Choloepus
hoffmanni (Hoffmann's two-fingered sloth)
Length = 289
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 caggaggatcccttgagcccagga 116
||||||||||||||||||||||||
Sbjct: 52 caggaggatcccttgagcccagga 75
>RF00017;Metazoa_SRP;ABRP01382520.1/645-344 132908:Pteropus vampyrus
(large flying fox)
Length = 302
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 93 caggaggatcccttgagcccaggaattt 120
|||||||||| |||||||||||||||||
Sbjct: 52 caggaggatcacttgagcccaggaattt 79
>RF00017;Metazoa_SRP;AAEX02025291.1/112827-113119 9615:Canis lupus
familiaris (dog)
Length = 293
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 caggaggatcccttgagcccagga 116
||||||||||||||||||||||||
Sbjct: 52 caggaggatcccttgagcccagga 75
>RF00017;Metazoa_SRP;ABDC01258296.1/1299-1046 30608:Microcebus
murinus (gray mouse lemur)
Length = 254
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 125 ccaccctgggcaacatagggagac 148
||||||||||||||||||||||||
Sbjct: 220 ccaccctgggcaacatagggagac 243
>RF00017;Metazoa_SRP;ABDC01367514.1/133-412 30608:Microcebus murinus
(gray mouse lemur)
Length = 280
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 95 ggaggatcccttgagcccaggaatttga 122
|||||||| |||||||||||||||||||
Sbjct: 54 ggaggatcgcttgagcccaggaatttga 81
>RF00017;Metazoa_SRP;ABDC01521890.1/1044-743 30608:Microcebus
murinus (gray mouse lemur)
Length = 302
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 caggaggatcccttgagcccagga 116
||||||||||||||||||||||||
Sbjct: 52 caggaggatcccttgagcccagga 75
>RF00017;Metazoa_SRP;ABDC01457431.1/1387-1663 30608:Microcebus
murinus (gray mouse lemur)
Length = 277
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 caggaggatcccttgagcccagga 116
||||||||||||||||||||||||
Sbjct: 52 caggaggatcccttgagcccagga 75
>RF00017;Metazoa_SRP;AANU01185315.1/1530-1833 9544:Macaca mulatta
(rhesus monkey)
Length = 304
Score = 48.1 bits (24), Expect = 4e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 93 caggaggatcccttgagcccaggaattt 120
|||||||||| |||||||||||||||||
Sbjct: 56 caggaggatcgcttgagcccaggaattt 83
>RF00017;Metazoa_SRP;AANU01175055.1/14705-14407 9544:Macaca mulatta
(rhesus monkey)
Length = 299
Score = 48.1 bits (24), Expect = 4e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 93 caggaggatcccttgagcccagga 116
||||||||||||||||||||||||
Sbjct: 52 caggaggatcccttgagcccagga 75
>RF00017;Metazoa_SRP;ABRR01125890.1/745-1044 30538:Lama pacos
(alpaca)
Length = 300
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 93 caggaggatcccttgagcccaggaatt 119
|||||||||| ||||||||||||||||
Sbjct: 56 caggaggatcacttgagcccaggaatt 82
>RF00017;Metazoa_SRP;AAQR01658055.1/6357-6070 30611:Otolemur
garnettii (small-eared galago)
Length = 288
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 93 caggaggatcccttgagcccaggaatt 119
|||||||||| ||||||||||||||||
Sbjct: 52 caggaggatcacttgagcccaggaatt 78
>RF00017;Metazoa_SRP;ABDC01361116.1/1442-1152 30608:Microcebus
murinus (gray mouse lemur)
Length = 291
Score = 46.1 bits (23), Expect = 2e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 92 tcaggaggatcccttgagcccaggaatttga 122
||||||||||| ||||||||||||| |||||
Sbjct: 184 tcaggaggatcacttgagcccaggagtttga 214
>RF00017;Metazoa_SRP;ABDC01065960.1/1018-1283 30608:Microcebus
murinus (gray mouse lemur)
Length = 266
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 93 caggaggatcccttgagcccaggaatt 119
|||||||||| ||||||||||||||||
Sbjct: 52 caggaggatcacttgagcccaggaatt 78
>RF00017;Metazoa_SRP;ABGA01184360.1/2128-1793 9601:Pongo abelii
(Sumatran orangutan)
Length = 336
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 94 aggaggatcccttgagcccagga 116
|||||||||||||||||||||||
Sbjct: 58 aggaggatcccttgagcccagga 80
>RF00017;Metazoa_SRP;AADC01141458.1/7885-7586 9606:Homo sapiens
(human)
Length = 300
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 93 caggaggatcccttgagcccaggaatt 119
|||||||||| ||||||||||||||||
Sbjct: 52 caggaggatcgcttgagcccaggaatt 78
>RF00017;Metazoa_SRP;AANU01224890.1/34128-34421 9544:Macaca mulatta
(rhesus monkey)
Length = 294
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 93 caggaggatcccttgagcccaggaatt 119
||||||||||||| |||||||||||||
Sbjct: 52 caggaggatccctagagcccaggaatt 78
>RF00017;Metazoa_SRP;AAFR03037401.1/195137-195425 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 289
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 95 ggaggatcccttgagcccagga 116
||||||||||||||||||||||
Sbjct: 54 ggaggatcccttgagcccagga 75
>RF00017;Metazoa_SRP;AANN01373259.1/389-93 9365:Erinaceus europaeus
(western European hedgehog)
Length = 297
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 95 ggaggatcccttgagcccagga 116
||||||||||||||||||||||
Sbjct: 54 ggaggatcccttgagcccagga 75
>RF00017;Metazoa_SRP;AANN01016707.1/414-134 9365:Erinaceus europaeus
(western European hedgehog)
Length = 281
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 95 ggaggatcccttgagcccagga 116
||||||||||||||||||||||
Sbjct: 52 ggaggatcccttgagcccagga 73
>RF00017;Metazoa_SRP;AAQR01178761.1/495-790 30611:Otolemur garnettii
(small-eared galago)
Length = 296
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 95 ggaggatcccttgagcccagga 116
||||||||||||||||||||||
Sbjct: 55 ggaggatcccttgagcccagga 76
>RF00017;Metazoa_SRP;ABDC01610525.1/37-318 30608:Microcebus murinus
(gray mouse lemur)
Length = 282
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 93 caggaggatcccttgagcccaggaatttga 122
|||||||||| ||||||||||||| |||||
Sbjct: 52 caggaggatcgcttgagcccaggagtttga 81
>RF00017;Metazoa_SRP;ABDC01474612.1/2158-1874 30608:Microcebus
murinus (gray mouse lemur)
Length = 285
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 93 caggaggatcccttgagcccaggaatttga 122
|||||||||| ||||||||||||| |||||
Sbjct: 52 caggaggatcgcttgagcccaggagtttga 81
>RF00017;Metazoa_SRP;ABDC01416894.1/5587-5886 30608:Microcebus
murinus (gray mouse lemur)
Length = 300
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 95 ggaggatcccttgagcccagga 116
||||||||||||||||||||||
Sbjct: 54 ggaggatcccttgagcccagga 75
>RF00017;Metazoa_SRP;ABDC01050430.1/7616-7890 30608:Microcebus
murinus (gray mouse lemur)
Length = 275
Score = 44.1 bits (22), Expect = 6e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 97 aggatcccttgagcccaggaatttga 122
|||||||||||||||||||| |||||
Sbjct: 56 aggatcccttgagcccaggagtttga 81
>RF00017;Metazoa_SRP;ABDC01217565.1/12187-12476 30608:Microcebus
murinus (gray mouse lemur)
Length = 290
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 93 caggaggatcccttgagcccaggaatttga 122
|||||||||| ||||||||||||| |||||
Sbjct: 51 caggaggatcgcttgagcccaggagtttga 80
>RF00017;Metazoa_SRP;ABDC01092908.1/13895-13618 30608:Microcebus
murinus (gray mouse lemur)
Length = 278
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 93 caggaggatcccttgagcccaggaatttga 122
|||||||||| ||||||||||||| |||||
Sbjct: 52 caggaggatcacttgagcccaggagtttga 81
>RF00017;Metazoa_SRP;ABDC01080743.1/7624-7905 30608:Microcebus
murinus (gray mouse lemur)
Length = 282
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 93 caggaggatcccttgagcccaggaatttga 122
|||||||||| ||||||||||||| |||||
Sbjct: 52 caggaggatcacttgagcccaggagtttga 81
>RF00017;Metazoa_SRP;ABDC01606173.1/591-865 30608:Microcebus murinus
(gray mouse lemur)
Length = 275
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 93 caggaggatcccttgagcccaggaatttga 122
|||||||||| ||||||||||||| |||||
Sbjct: 52 caggaggatcgcttgagcccaggagtttga 81
>RF00017;Metazoa_SRP;ABDC01277652.1/2350-2057 30608:Microcebus
murinus (gray mouse lemur)
Length = 294
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 93 caggaggatcccttgagcccaggaatttga 122
|||||||||| ||||||||||||| |||||
Sbjct: 52 caggaggatcgcttgagcccaggagtttga 81
>RF00017;Metazoa_SRP;ABGA01149610.1/5383-5679 9601:Pongo abelii
(Sumatran orangutan)
Length = 297
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 95 ggaggatcccttgagcccagga 116
||||||||||||||||||||||
Sbjct: 51 ggaggatcccttgagcccagga 72
>RF00017;Metazoa_SRP;AADA01227083.1/19468-19169 9598:Pan troglodytes
(chimpanzee)
Length = 300
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 129 cctgggcaacatagggagacatcatctcaa 158
|||||||||||||| ||||| |||||||||
Sbjct: 271 cctgggcaacatagtgagacctcatctcaa 300
>RF00017;Metazoa_SRP;CABD01089014.1/3815-4111 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 297
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 95 ggaggatcccttgagcccagga 116
||||||||||||||||||||||
Sbjct: 53 ggaggatcccttgagcccagga 74
>RF00017;Metazoa_SRP;CABD01216595.1/731-439 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 293
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 95 ggaggatcccttgagcccagga 116
||||||||||||||||||||||
Sbjct: 54 ggaggatcccttgagcccagga 75
>RF00017;Metazoa_SRP;CABD01124760.2/1575-1867 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 293
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 95 ggaggatcccttgagcccagga 116
||||||||||||||||||||||
Sbjct: 48 ggaggatcccttgagcccagga 69
>RF00017;Metazoa_SRP;AANU01152284.1/1057-1351 9544:Macaca mulatta
(rhesus monkey)
Length = 295
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 95 ggaggatcccttgagcccagga 116
||||||||||||||||||||||
Sbjct: 53 ggaggatcccttgagcccagga 74
>RF00017;Metazoa_SRP;AANU01245762.1/1176-884 9544:Macaca mulatta
(rhesus monkey)
Length = 293
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 95 ggaggatcccttgagcccagga 116
||||||||||||||||||||||
Sbjct: 54 ggaggatcccttgagcccagga 75
>RF00017;Metazoa_SRP;AANU01100403.1/1773-1426 9544:Macaca mulatta
(rhesus monkey)
Length = 348
Score = 44.1 bits (22), Expect = 6e-04
Identities = 49/58 (84%)
Strand = Plus / Minus
Query: 37 caggctggaatgcactggcatggtcatacctcactgcggcctcaaactgctgggctca 94
|||||| || |||| ||||||| ||||| |||||| ||||||||||| |||| ||||
Sbjct: 122 caggctagagtgcagtggcatgttcatagttcactgtggcctcaaactcctggactca 65
