miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00684;mir-122;BAAE01201314.1/775-848 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 101 bits (51), Expect = 2e-21
Identities = 66/71 (92%)
Strand = Plus / Minus
Query: 25 gtagctatttagtgtgataatggcgtttgatagtttagacacaaacaccattgtcacact 84
||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct: 71 gtagctatttagtgtgataatggcgtttgataggcaggaaacaaacaccattgtcacact 12
Query: 85 ccacagctctg 95
|||||||||||
Sbjct: 11 ccacagctctg 1
>RF00684;mir-122;AAWZ01008604.1/2344-2417 28377:Anolis
carolinensis (green anole)
Length = 74
Score = 99.6 bits (50), Expect = 8e-21
Identities = 65/70 (92%)
Strand = Plus / Minus
Query: 24 agtagctatttagtgtgataatggcgtttgatagtttagacacaaacaccattgtcacac 83
||||||||||||||||||||||||||||||| | || || |||||||||||||||||||
Sbjct: 72 agtagctatttagtgtgataatggcgtttgacggattggatacaaacaccattgtcacac 13
Query: 84 tccacagctc 93
||||||||||
Sbjct: 12 tccacagctc 3
>RF00684;mir-122;AABR04103114.1/951-878 10116:Rattus norvegicus
(Norway rat)
Length = 74
Score = 95.6 bits (48), Expect = 1e-19
Identities = 66/72 (91%)
Strand = Plus / Minus
Query: 24 agtagctatttagtgtgataatggcgtttgatagtttagacacaaacaccattgtcacac 83
||||||| ||||||||||| |||||||||||| ||| ||||||||||||||||||||||
Sbjct: 72 agtagctgtttagtgtgatgatggcgtttgatgttttggacacaaacaccattgtcacac 13
Query: 84 tccacagctctg 95
|||| |||||||
Sbjct: 12 tccagagctctg 1
>RF00684;mir-122;CR925730.6/26724-26798 7955:Danio rerio
(zebrafish)
Length = 75
Score = 67.9 bits (34), Expect = 3e-11
Identities = 63/71 (88%), Gaps = 5/71 (7%)
Strand = Plus / Minus
Query: 28 gctatttagtgtgataatggcgtttgat---agtttagacacaaacaccattgtcacact 84
||||||||||||||||||||||||||| || | || ||||||||||||||||||||
Sbjct: 69 gctatttagtgtgataatggcgtttgacgacagat--gatacaaacaccattgtcacact 12
Query: 85 ccacagctctg 95
|||||||||||
Sbjct: 11 ccacagctctg 1
>RF00684;mir-122;AAVX01098255.1/690-764 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 30 tatttagtgtgataatggcgtttgat 55
||||||||||||||||||||||||||
Sbjct: 67 tatttagtgtgataatggcgtttgat 42
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 65 acaaacaccattgtcacactcca 87
|||||||||||||||||||||||
Sbjct: 31 acaaacaccattgtcacactcca 9
