miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AADN02013953.1/12681-12597 9031:Gallus gallus
(chicken)
Length = 85
Score = 115 bits (58), Expect = 1e-25
Identities = 76/82 (92%)
Strand = Plus / Minus
Query: 5 ctaagaaaggcagcaggttgtatagttaactccttttgggcaaaaccactgccctaaaac 64
|||||||||||||||||||||||||||| |||||| || |||||| | ||||||||||||
Sbjct: 85 ctaagaaaggcagcaggttgtatagttacctccttgtgagcaaaatccctgccctaaaac 26
Query: 65 tatgcaacctactacctcttcc 86
||||||||| ||||||||||||
Sbjct: 25 tatgcaacccactacctcttcc 4
>RF00027;let-7;AAVX01008163.1/128-212 7868:Callorhinchus milii
(ghost shark)
Length = 85
Score = 113 bits (57), Expect = 4e-25
Identities = 75/81 (92%)
Strand = Plus / Minus
Query: 9 gaaaggcagcaggttgtatagttaactccttttgggcaaaaccactgccctaaaactatg 68
|||||||||||||||||||||||| ||||||| |||||||| | ||||||| ||||||||
Sbjct: 81 gaaaggcagcaggttgtatagttatctcctttggggcaaaatccctgccctcaaactatg 22
Query: 69 caacctactacctcttcccag 89
||||||||||||||| |||||
Sbjct: 21 caacctactacctctacccag 1
>RF00027;let-7;ABRT010188166.1/5185-5269 9478:Tarsius syrichta
(Philippine tarsier)
Length = 85
Score = 73.8 bits (37), Expect = 3e-13
Identities = 64/73 (87%)
Strand = Plus / Minus
Query: 9 gaaaggcagcaggttgtatagttaactccttttgggcaaaaccactgccctaaaactatg 68
|||||||||||||| ||||| || ||||| ||| ||||||| ||||||||||||||||
Sbjct: 81 gaaaggcagcaggtcatataggtacctcctagtggacaaaaccgctgccctaaaactatg 22
Query: 69 caacctactacct 81
|||||||| ||||
Sbjct: 21 caacctacaacct 9
>RF00027;let-7;ABDC01518424.1/1820-1902 30608:Microcebus murinus
(gray mouse lemur)
Length = 83
Score = 63.9 bits (32), Expect = 3e-10
Identities = 62/71 (87%), Gaps = 2/71 (2%)
Strand = Plus / Minus
Query: 5 ctaagaaaggcagcaggttgtatagttaactccttttgggcaaaaccactgccctaaaac 64
||||||||||||||||||||||||||||| |||| ||| ||||| | ||||||| ||||
Sbjct: 83 ctaagaaaggcagcaggttgtatagttaa--ccttatggacaaaatctctgccctgaaac 26
Query: 65 tatgcaaccta 75
|| | ||||||
Sbjct: 25 tacgtaaccta 15
>RF00027;let-7;AAVX01108779.1/886-806 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 56 ccctaaaactatgcaacctactacctcttccca 88
|||||||||||| |||||||||||||| |||||
Sbjct: 34 ccctaaaactatacaacctactacctcatccca 2
>RF00027;let-7;AAVX01586337.1/294-214 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 56 ccctaaaactatgcaacctactacctcttccca 88
|||||||||||| |||||||||||||| |||||
Sbjct: 34 ccctaaaactatacaacctactacctcatccca 2
>RF00027;let-7;AAWZ01027397.1/1152-1066 28377:Anolis carolinensis
(green anole)
Length = 87
Score = 46.1 bits (23), Expect = 8e-05
Identities = 62/74 (83%), Gaps = 2/74 (2%)
Strand = Plus / Minus
Query: 11 aaggcagcaggttgtatagttaactcct--tttgggcaaaaccactgccctaaaactatg 68
||||||| |||||||||||||| ||||| || |||||||| ||| |||| |||| |
Sbjct: 81 aaggcagtaggttgtatagttatctcctgattggggcaaaatgactaccctgaaaccaca 22
Query: 69 caacctactacctc 82
||||||||||||||
Sbjct: 21 caacctactacctc 8
>RF00027;let-7;BAAF04050050.1/5012-4932 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 56 ccctaaaactatgcaacctactacctc 82
|||||||||||| ||||||||||||||
Sbjct: 34 ccctaaaactatacaacctactacctc 8
>RF00027;let-7;BAAE01055973.1/4881-4962 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 56 ccctaaaactatgcaacctactacctc 82
|||||||||||| ||||||||||||||
Sbjct: 34 ccctaaaactatacaacctactacctc 8
>RF00027;let-7;AAVX01031590.1/1741-1655 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 46.1 bits (23), Expect = 8e-05
Identities = 62/74 (83%), Gaps = 2/74 (2%)
Strand = Plus / Minus
Query: 11 aaggcagcaggttgtatagttaactccttttggg--caaaaccactgccctaaaactatg 68
||||||| |||||||||||||| ||||| |||| |||| |||| |||| ||||||
Sbjct: 81 aaggcagtaggttgtatagttatctcctgatggggcaaaaatcactaccctgaaactaca 22
Query: 69 caacctactacctc 82
||||||||||||||
Sbjct: 21 caacctactacctc 8
>RF00027;let-7;AAWZ01028874.1/2440-2520 28377:Anolis carolinensis
(green anole)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 56 ccctaaaactatgcaacctactacctcttcccag 89
|||||||||||| ||| |||||||||| ||||||
Sbjct: 34 ccctaaaactatacaatctactacctcatcccag 1
>RF00027;let-7;AANH01006181.1/186487-186407 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 59 taaaactatgcaacctactacctcttccca 88
||||||||| |||||||||||||| |||||
Sbjct: 31 taaaactatacaacctactacctcatccca 2
>RF00027;let-7;BAAE01218263.1/598-683 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 11 aaggcagcaggttgtatagttaactccttttggg 44
||||||| |||||||||||||| |||||| ||||
Sbjct: 80 aaggcagtaggttgtatagttagctccttatggg 47
