miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00103;mir-1;AAWZ01009147.1/60407-60483 28377:Anolis
carolinensis (green anole)
Length = 77
Score = 121 bits (61), Expect = 2e-27
Identities = 75/77 (97%), Gaps = 2/77 (2%)
Strand = Plus / Plus
Query: 12 gttgagagcacatacttctttatgtacccatatg-agatacaatg-tatggaatgtaaag 69
|||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||
Sbjct: 1 gttgagagcacatacttctttatgtacccatatgaagatacaatgttatggaatgtaaag 60
Query: 70 aagtatgtatttttgat 86
|||||||||||||||||
Sbjct: 61 aagtatgtatttttgat 77
>RF00103;mir-1;AC147912.2/160163-160239 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 77
Score = 89.7 bits (45), Expect = 6e-18
Identities = 62/65 (95%), Gaps = 2/65 (3%)
Strand = Plus / Plus
Query: 21 acatacttctttatgtacccatatgag-atacaatg-tatggaatgtaaagaagtatgta 78
|||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||
Sbjct: 10 acatacttctttatgtacccatatgaacatacaatgctatggaatgtaaagaagtatgta 69
Query: 79 ttttt 83
|||||
Sbjct: 70 ttttt 74
>RF00103;mir-1;AANU01221577.1/6692-6768 9544:Macaca mulatta
(rhesus monkey)
Length = 77
Score = 81.8 bits (41), Expect = 1e-15
Identities = 64/69 (92%), Gaps = 2/69 (2%)
Strand = Plus / Plus
Query: 16 agagcacatacttctttatgtacccatatg-agatacaatg-tatggaatgtaaagaagt 73
|||| ||||||||||||||||||||||||| | |||||| | ||||||||||||||||||
Sbjct: 5 agagtacatacttctttatgtacccatatgaacatacaaggctatggaatgtaaagaagt 64
Query: 74 atgtatttt 82
|||||||||
Sbjct: 65 atgtatttt 73
>RF00103;mir-1;AALT01502699.1/11496-11572 42254:Sorex araneus
(European shrew)
Length = 77
Score = 77.8 bits (39), Expect = 2e-14
Identities = 65/71 (91%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 16 agagcacatacttctttatgtacccatatg-agatacaatg-tatggaatgtaaagaagt 73
|||| ||||||||||||||||||||||||| | ||| |||| ||||||||||||||||||
Sbjct: 5 agagtacatacttctttatgtacccatatgaacatagaatgctatggaatgtaaagaagt 64
Query: 74 atgtatttttg 84
||||| |||||
Sbjct: 65 atgtacttttg 75
>RF00103;mir-1;ABRQ01120821.1/5388-5463 9813:Procavia capensis
(cape rock hyrax)
Length = 76
Score = 77.8 bits (39), Expect = 2e-14
Identities = 66/71 (92%), Gaps = 3/71 (4%)
Strand = Plus / Plus
Query: 16 agagcacatacttctttatgtacccatatgag-atacaatg-tatggaatgtaaagaagt 73
|||| |||||||||||||||||||||||||| ||| |||| ||||||||||||||||||
Sbjct: 5 agagtacatacttctttatgtacccatatgaacata-aatgctatggaatgtaaagaagt 63
Query: 74 atgtatttttg 84
|||||||||||
Sbjct: 64 atgtatttttg 74
>RF00103;mir-1;BAAE01219800.1/733-656 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 63.9 bits (32), Expect = 3e-10
Identities = 57/63 (90%), Gaps = 3/63 (4%)
Strand = Plus / Plus
Query: 21 acatacttctttatgtacccatatg-agata--caatgtatggaatgtaaagaagtatgt 77
||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||
Sbjct: 10 acatacttctttatgtacccatatgaagatatgaaagctatggaatgtaaagaagtatgt 69
Query: 78 att 80
|||
Sbjct: 70 att 72
>RF00103;mir-1;AAVX01053845.1/1717-1792 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 60.0 bits (30), Expect = 5e-09
Identities = 58/66 (87%), Gaps = 1/66 (1%)
Strand = Plus / Plus
Query: 20 cacatacttctttatgtacccatatgagatacaatg-tatggaatgtaaagaagtatgta 78
||||||||||||||| ||||||||||| | | | |||||||||||||||||||||||
Sbjct: 9 cacatacttctttatatacccatatgaacttaacagctatggaatgtaaagaagtatgta 68
Query: 79 tttttg 84
||||||
Sbjct: 69 tttttg 74
>RF00103;mir-1;AAVX01164741.1/393-468 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 56 tatggaatgtaaagaagtatgtatttttg 84
|||||||||||||||||||||||||||||
Sbjct: 46 tatggaatgtaaagaagtatgtatttttg 74
>RF00103;mir-1;CAAB01000636.1/82977-83054 31033:Takifugu rubripes
Length = 78
Score = 56.0 bits (28), Expect = 8e-08
Identities = 56/63 (88%), Gaps = 3/63 (4%)
Strand = Plus / Plus
Query: 21 acatacttctttatgtacccatat-gagatacaat--gtatggaatgtaaagaagtatgt 77
|||||||||||||||||||||||| || ||| || ||||||||||||||||||||||
Sbjct: 10 acatacttctttatgtacccatatggacatatgataactatggaatgtaaagaagtatgt 69
Query: 78 att 80
|||
Sbjct: 70 att 72
>RF00103;mir-1;AADN02019229.1/42946-42870 9031:Gallus gallus
(chicken)
Length = 77
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 51 caatgtatggaatgtaaagaagtatgtattt 81
|||| ||||||||||||||||||||||||||
Sbjct: 42 caatctatggaatgtaaagaagtatgtattt 72
>RF00103;mir-1;CAAA01046548.1/3034-3110 10090:Mus musculus (house
mouse)
Length = 77
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 56 tatggaatgtaaagaagtatgtattt 81
||||||||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatgtattt 72
>RF00103;mir-1;ABEP02026713.1/2484-2559 7739:Branchiostoma
floridae (Florida lancelet)
Length = 76
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 54 tgtatggaatgtaaagaagtatgtat 79
||||||||||||||||||||||||||
Sbjct: 44 tgtatggaatgtaaagaagtatgtat 69
>RF00103;mir-1;AAGJ02015940.1/12697-12776 7668:Strongylocentrotus
purpuratus
Length = 80
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 56 tatggaatgtaaagaagtatgtatt 80
|||||||||||||||||||||||||
Sbjct: 50 tatggaatgtaaagaagtatgtatt 74
>RF00103;mir-1;AAGV020639359.1/176-251 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 76
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 tatggaatgtaaagaagtatgtat 79
||||||||||||||||||||||||
Sbjct: 46 tatggaatgtaaagaagtatgtat 69
>RF00103;mir-1;ABRQ01775995.1/455-531 9813:Procavia capensis (cape
rock hyrax)
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 tatggaatgtaaagaagtatgtat 79
||||||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatgtat 70
>RF00103;mir-1;BAAF04064761.1/1030-1106 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 56 tatggaatgtaaagaagtatgtat 79
||||||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatgtat 70
>RF00103;mir-1;ABIR01002879.1/50521-50595 6334:Trichinella
spiralis
Length = 75
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 tatggaatgtaaagaagtatgta 78
|||||||||||||||||||||||
Sbjct: 45 tatggaatgtaaagaagtatgta 67
>RF00103;mir-1;CABB01004866.1/4222-4314 6306:Meloidogyne incognita
(southern root-knot nematode)
Length = 93
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 tatggaatgtaaagaagtatgta 78
|||||||||||||||||||||||
Sbjct: 63 tatggaatgtaaagaagtatgta 85
>RF00103;mir-1;ABLE02030552.1/3109-3195 281687:Caenorhabditis
japonica
Length = 87
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 tatggaatgtaaagaagtatgta 78
|||||||||||||||||||||||
Sbjct: 57 tatggaatgtaaagaagtatgta 79
>RF00103;mir-1;AAGD02012398.1/27745-27823 31234:Caenorhabditis
remanei
Length = 79
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 tatggaatgtaaagaagtatgta 78
|||||||||||||||||||||||
Sbjct: 49 tatggaatgtaaagaagtatgta 71
>RF00103;mir-1;CAAC02000511.1/295307-295229 6238:Caenorhabditis
briggsae
Length = 79
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 tatggaatgtaaagaagtatgta 78
|||||||||||||||||||||||
Sbjct: 49 tatggaatgtaaagaagtatgta 71
>RF00103;mir-1;ABKE01004849.1/5673-5592 54126:Pristionchus
pacificus
Length = 82
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 tatggaatgtaaagaagtatgta 78
|||||||||||||||||||||||
Sbjct: 52 tatggaatgtaaagaagtatgta 74
>RF00103;mir-1;AAYZ01364871.1/459-535 9978:Ochotona princeps
(American pika)
Length = 77
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 56 tatggaatgtaaagaagtatgta 78
|||||||||||||||||||||||
Sbjct: 47 tatggaatgtaaagaagtatgta 69
>RF00103;mir-1;AAQR01319106.1/4854-4930 30611:Otolemur garnettii
(small-eared galago)
Length = 77
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 21 acatacttctttatgtacccatatga 46
||||||||| ||||||||||||||||
Sbjct: 10 acatacttcgttatgtacccatatga 35
>RF00103;mir-1;ABLF01045264.1/8417-8511 7029:Acyrthosiphon pisum
(pea aphid)
Length = 95
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 gtatggaatgtaaagaagtatg 76
||||||||||||||||||||||
Sbjct: 67 gtatggaatgtaaagaagtatg 88
>RF00103;mir-1;AAZX01000650.1/30055-30128 7425:Nasonia vitripennis
(jewel wasp)
Length = 74
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 gtatggaatgtaaagaagtatg 76
||||||||||||||||||||||
Sbjct: 43 gtatggaatgtaaagaagtatg 64
>RF00103;mir-1;AADG05005577.1/859-932 7460:Apis mellifera (honey
bee)
Length = 74
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 gtatggaatgtaaagaagtatg 76
||||||||||||||||||||||
Sbjct: 43 gtatggaatgtaaagaagtatg 64
>RF00103;mir-1;AAJJ01000046.1/50771-50844 7070:Tribolium castaneum
(red flour beetle)
Length = 74
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 gtatggaatgtaaagaagtatg 76
||||||||||||||||||||||
Sbjct: 43 gtatggaatgtaaagaagtatg 64
>RF00103;mir-1;ABJB010316955.1/9942-10021 6945:Ixodes scapularis
(black-legged tick)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 55 gtatggaatgtaaagaagtatg 76
||||||||||||||||||||||
Sbjct: 49 gtatggaatgtaaagaagtatg 70
