miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00661;mir-31;AAWZ01002824.1/52915-52993 28377:Anolis
carolinensis (green anole)
Length = 79
Score = 157 bits (79), Expect = 3e-38
Identities = 79/79 (100%)
Strand = Plus / Plus
Query: 1 agagctggagcggaggcaagatgttggcatagctgatgagttaagaacctgctatgccaa 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 agagctggagcggaggcaagatgttggcatagctgatgagttaagaacctgctatgccaa 60
Query: 61 catattgccctctttcctg 79
|||||||||||||||||||
Sbjct: 61 catattgccctctttcctg 79
>RF00661;mir-31;AAPN01033181.1/1752-1830 9258:Ornithorhynchus
anatinus (platypus)
Length = 79
Score = 95.6 bits (48), Expect = 8e-20
Identities = 69/76 (90%)
Strand = Plus / Plus
Query: 1 agagctggagcggaggcaagatgttggcatagctgatgagttaagaacctgctatgccaa 60
|||||||||| | |||||||||||||||||||||| |||||||||||||||||||||| |
Sbjct: 1 agagctggagagaaggcaagatgttggcatagctgttgagttaagaacctgctatgccga 60
Query: 61 catattgccctctttc 76
||| ||| | ||||||
Sbjct: 61 catgttgtcatctttc 76
>RF00661;mir-31;AC189661.2/146363-146285 9031:Gallus gallus
(chicken)
Length = 79
Score = 93.7 bits (47), Expect = 3e-19
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 1 agagctggagcggaggcaagatgttggcatagctgatgagttaagaacctgctatgccaa 60
|||||||||| |||||||||||||||||||||||| | | ||| |||||||||||||||
Sbjct: 1 agagctggaggggaggcaagatgttggcatagctgttaacctaaaaacctgctatgccaa 60
Query: 61 catattgccctctttcctg 79
||||||| | |||||||||
Sbjct: 61 catattgtcatctttcctg 79
>RF00661;mir-31;ABRQ01173586.1/2990-2912 9813:Procavia capensis
(cape rock hyrax)
Length = 79
Score = 79.8 bits (40), Expect = 5e-15
Identities = 64/72 (88%)
Strand = Plus / Plus
Query: 5 ctggagcggaggcaagatgttggcatagctgatgagttaagaacctgctatgccaacata 64
|||||| |||||||||||| ||||||||||| ||| | ||||||||||||||||||||
Sbjct: 5 ctggagaggaggcaagatgctggcatagctgttgaactgggaacctgctatgccaacata 64
Query: 65 ttgccctctttc 76
||||| ||||||
Sbjct: 65 ttgccatctttc 76
>RF00661;mir-31;ABKE01002614.1/3132-3048 54126:Pristionchus
pacificus
Length = 85
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 13 gaggcaagatgttggcatagctgatg 38
||||||||||||||||||||||||||
Sbjct: 13 gaggcaagatgttggcatagctgatg 38
>RF00661;mir-31;ABIR01000861.1/40343-40422 6334:Trichinella
spiralis
Length = 80
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 aggcaagatgttggcatagctga 36
|||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctga 36
>RF00661;mir-31;AAQA01000036.1/3121-3003 6279:Brugia malayi
Length = 119
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 aggcaagatgttggcatagctga 36
|||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctga 36
>RF00661;mir-31;ABLE02017251.1/2159-2248 281687:Caenorhabditis
japonica
Length = 90
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 aggcaagatgttggcatagctga 36
|||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctga 36
>RF00661;mir-31;AF025464.1/2448-2533 6239:Caenorhabditis elegans
Length = 86
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 aggcaagatgttggcatagctga 36
|||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctga 36
>RF00661;mir-31;AAGD02002064.1/2567-2487 31234:Caenorhabditis
remanei
Length = 81
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 aggcaagatgttggcatagctga 36
|||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctga 36
>RF00661;mir-31;ABEG01018473.1/18882-18994 135651:Caenorhabditis
brenneri
Length = 113
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 14 aggcaagatgttggcatagctga 36
|||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctga 36
>RF00661;mir-31;ABEG01018473.1/17089-17170 135651:Caenorhabditis
brenneri
Length = 82
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 15 ggcaagatgttggcatagctga 36
||||||||||||||||||||||
Sbjct: 15 ggcaagatgttggcatagctga 36
>RF00661;mir-31;AAGJ02119479.1/16120-16038 7668:Strongylocentrotus
purpuratus
Length = 83
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 aggcaagatgttggcatagctg 35
||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctg 35
>RF00661;mir-31;AANH01007167.1/95060-94981 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 80
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 14 aggcaagatgttggcatagctg 35
||||||||||||||||||||||
Sbjct: 14 aggcaagatgttggcatagctg 35
