miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00074;mir-29;AADN02039691.1/13652-13582 9031:Gallus gallus
(chicken)
Length = 71
Score = 101 bits (51), Expect = 2e-21
Identities = 63/67 (94%)
Strand = Plus / Plus
Query: 17 aggaagctggtttcatatggtggtttagatttaagtacacaatgtctagcaccatttgaa 76
|||||||||||||||||||||||||||||||||| || || ||||||||||||||||||
Sbjct: 1 aggaagctggtttcatatggtggtttagatttaactattcattgtctagcaccatttgaa 60
Query: 77 atcagtg 83
|||||||
Sbjct: 61 atcagtg 67
>RF00074;mir-29;AAVX01119247.1/689-758 7868:Callorhinchus milii
(ghost shark)
Length = 70
Score = 61.9 bits (31), Expect = 1e-09
Identities = 55/63 (87%)
Strand = Plus / Plus
Query: 21 agctggtttcatatggtggtttagatttaagtacacaatgtctagcaccatttgaaatca 80
|||||||||| ||||||||||||||| ||| | | ||||||||||||||||||||||
Sbjct: 4 agctggtttcctatggtggtttagatgtaactcagctgtgtctagcaccatttgaaatca 63
Query: 81 gtg 83
|||
Sbjct: 64 gtg 66
>RF00074;mir-29;CAAE01013715.1/7308-7378 99883:Tetraodon
nigroviridis
Length = 71
Score = 50.1 bits (25), Expect = 6e-06
Identities = 55/65 (84%)
Strand = Plus / Plus
Query: 19 gaagctggtttcatatggtggtttagatttaagtacacaatgtctagcaccatttgaaat 78
||||||||||||| ||||||||||||| | | | || |||||||||||||||||||
Sbjct: 3 gaagctggtttcacgtggtggtttagatgtgtctcctcatcgtctagcaccatttgaaat 62
Query: 79 cagtg 83
|||||
Sbjct: 63 cagtg 67
>RF00074;mir-29;BAAE01022609.1/1375-1305 8090:Oryzias latipes
(Japanese medaka)
Length = 71
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 59 tgtctagcaccatttgaaatcagtg 83
|||||||||||||||||||||||||
Sbjct: 43 tgtctagcaccatttgaaatcagtg 67
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 19 gaagctggtttcatatggtggtttagat 46
|||||||||||||| |||||||||||||
Sbjct: 3 gaagctggtttcatgtggtggtttagat 30
>RF00074;mir-29;BX465862.7/161280-161350 7955:Danio rerio
(zebrafish)
Length = 71
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 60 gtctagcaccatttgaaatcagtg 83
||||||||||||||||||||||||
Sbjct: 44 gtctagcaccatttgaaatcagtg 67
>RF00074;mir-29;AANN01104186.1/394-465 9365:Erinaceus europaeus
(western European hedgehog)
Length = 72
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tctagcaccatttgaaatcagtg 83
|||||||||||||||||||||||
Sbjct: 46 tctagcaccatttgaaatcagtg 68
>RF00074;mir-29;AADN02044957.1/1768-1698 9031:Gallus gallus
(chicken)
Length = 71
Score = 46.1 bits (23), Expect = 9e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 18 ggaagctggtttcatatggtggtttagattt 48
|||||||||||||| ||||||| ||||||||
Sbjct: 2 ggaagctggtttcacatggtggcttagattt 32
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tctagcaccatttgaaatcagtg 83
|||||||||||||||||||||||
Sbjct: 45 tctagcaccatttgaaatcagtg 67
>RF00074;mir-29;CAAK05057292.1/12337-12269 7955:Danio rerio
(zebrafish)
Length = 69
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tctagcaccatttgaaatcagtg 83
|||||||||||||||||||||||
Sbjct: 43 tctagcaccatttgaaatcagtg 65
>RF00074;mir-29;BX001041.6/159008-158937 7955:Danio rerio
(zebrafish)
Length = 72
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tctagcaccatttgaaatcagtg 83
|||||||||||||||||||||||
Sbjct: 46 tctagcaccatttgaaatcagtg 68
>RF00074;mir-29;BAAE01168881.1/2069-2001 8090:Oryzias latipes
(Japanese medaka)
Length = 69
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tctagcaccatttgaaatcagtg 83
|||||||||||||||||||||||
Sbjct: 43 tctagcaccatttgaaatcagtg 65
>RF00074;mir-29;AAVX01078214.1/596-525 7868:Callorhinchus milii
(ghost shark)
Length = 72
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 61 tctagcaccatttgaaatcagtg 83
|||||||||||||||||||||||
Sbjct: 46 tctagcaccatttgaaatcagtg 68
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 18 ggaagctggtttcatatggtggtttagatt 47
||||||||||||||||||||| |||||||
Sbjct: 2 ggaagctggtttcatatggtgtcttagatt 31
>RF00074;mir-29;BAAF04011924.1/411-473 8090:Oryzias latipes
(Japanese medaka)
Length = 63
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 58 atgtctagcaccatttgaaatc 79
||||||||||||||||||||||
Sbjct: 36 atgtctagcaccatttgaaatc 57
