miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00705;mir-202;AADN02046542.1/8507-8421 9031:Gallus gallus
(chicken)
Length = 87
Score = 117 bits (59), Expect = 3e-26
Identities = 77/83 (92%)
Strand = Plus / Plus
Query: 13 ttgttcctttttcctatgcatatacttctttgagaatctgatctaaagaggcatacggca 72
||||||||||||||||||||||||||||||||||| | ||||||||||||||||| |||
Sbjct: 5 ttgttcctttttcctatgcatatacttctttgagagtttgatctaaagaggcatagagca 64
Query: 73 tgggaaaatggggcaattgaggt 95
|||||||||||||| | ||||||
Sbjct: 65 tgggaaaatggggcgactgaggt 87
>RF00705;mir-202;ABQO010018421.1/2483-2569 9315:Macropus eugenii
(tammar wallaby)
Length = 87
Score = 103 bits (52), Expect = 4e-22
Identities = 67/72 (93%)
Strand = Plus / Plus
Query: 15 gttcctttttcctatgcatatacttctttgagaatctgatctaaagaggcatacggcatg 74
||||||||||||||||||||||||||||||||||| |||||||||||| || ||||||
Sbjct: 7 gttcctttttcctatgcatatacttctttgagaataaaatctaaagaggcgtagggcatg 66
Query: 75 ggaaaatggggc 86
||||||||||||
Sbjct: 67 ggaaaatggggc 78
>RF00705;mir-202;AAKN02002831.1/62715-62801 10141:Cavia porcellus
(domestic guinea pig)
Length = 87
Score = 103 bits (52), Expect = 4e-22
Identities = 70/76 (92%)
Strand = Plus / Plus
Query: 14 tgttcctttttcctatgcatatacttctttgagaatctgatctaaagaggcatacggcat 73
||||||||||||||||||||||||||||||||| ||||| ||||||||| ||| |||||
Sbjct: 6 tgttcctttttcctatgcatatacttctttgaggatctggcctaaagaggtatatggcat 65
Query: 74 gggaaaatggggcaat 89
|||||||||| |||||
Sbjct: 66 gggaaaatggagcaat 81
>RF00705;mir-202;ABRQ01469264.1/9221-9135 9813:Procavia capensis
(cape rock hyrax)
Length = 87
Score = 97.6 bits (49), Expect = 3e-20
Identities = 64/69 (92%)
Strand = Plus / Plus
Query: 15 gttcctttttcctatgcatatacttctttgagaatctgatctaaagaggcatacggcatg 74
|||||||||||||||||||||||||||||||| ||||| ||||||||| ||| ||||||
Sbjct: 7 gttcctttttcctatgcatatacttctttgaggatctggcctaaagaggtatagggcatg 66
Query: 75 ggaaaatgg 83
|||||||||
Sbjct: 67 ggaaaatgg 75
>RF00705;mir-202;CABD01575422.1/939-1025 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 87
Score = 87.7 bits (44), Expect = 2e-17
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 15 gttcctttttcctatgcatatacttctttgagaatctgatctaaagaggcatacggcatg 74
||||||||||||||||||||||||||||||| ||||| ||||||||| ||| ||||||
Sbjct: 7 gttcctttttcctatgcatatacttctttgaagatctggcctaaagaggtatagggcatg 66
Query: 75 ggaaaatggggc 86
|||||| |||||
Sbjct: 67 ggaaaacggggc 78
>RF00705;mir-202;BAAF04099470.1/3897-3811 8090:Oryzias latipes
(Japanese medaka)
Length = 87
Score = 75.8 bits (38), Expect = 9e-14
Identities = 67/74 (90%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 14 tgttcctttttcctatgcatatacttctttgagaatctga-tctaaagaggcatacggca 72
|||||||||||||||||||||||||||||||| || | | | |||||||||||| ||||
Sbjct: 6 tgttcctttttcctatgcatatacttctttga-catgtaactttaaagaggcataaggca 64
Query: 73 tgggaaaatggggc 86
||||||||||||||
Sbjct: 65 tgggaaaatggggc 78
>RF00705;mir-202;AC149072.1/21212-21298 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 87
Score = 67.9 bits (34), Expect = 2e-11
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 14 tgttcctttttcctatgcatatacttctttgagaatctgatctaaagaggcatacggcat 73
|||||||||||||||||||||||| ||||||| || || ||||| |||||| |||||
Sbjct: 6 tgttcctttttcctatgcatatacctctttgaaaaatgaatgtaaaggggcatagggcat 65
Query: 74 gggaaaatgg 83
||||||||||
Sbjct: 66 gggaaaatgg 75
>RF00705;mir-202;AAIY01420185.1/327-241 9371:Echinops telfairi
(small Madagascar hedgehog)
Length = 87
Score = 60.0 bits (30), Expect = 6e-09
Identities = 42/46 (91%)
Strand = Plus / Plus
Query: 18 cctttttcctatgcatatacttctttgagaatctgatctaaagagg 63
||||||||||||||||||||||||||||| |||| || |||||||
Sbjct: 10 cctttttcctatgcatatacttctttgagggtctggtccaaagagg 55
