miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00656;mir-205;AAWZ01003024.1/18367-18468 28377:Anolis
carolinensis (green anole)
Length = 102
Score = 190 bits (96), Expect = 2e-48
Identities = 96/96 (100%)
Strand = Plus / Plus
Query: 1 aatattccatgagttctattgtccttcattccaccggagtctgtctcatatctaatcaga 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7 aatattccatgagttctattgtccttcattccaccggagtctgtctcatatctaatcaga 66
Query: 61 tttcagtggagtgaagcacaagagacatggagttga 96
||||||||||||||||||||||||||||||||||||
Sbjct: 67 tttcagtggagtgaagcacaagagacatggagttga 102
>RF00656;mir-205;AAFR03023170.1/5678-5779 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 102
Score = 141 bits (71), Expect = 2e-33
Identities = 80/83 (96%)
Strand = Plus / Plus
Query: 14 ttctattgtccttcattccaccggagtctgtctcatatctaatcagatttcagtggagtg 73
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 20 ttctcttgtccttcattccaccggagtctgtctcatatctaatcagatttcagtggagtg 79
Query: 74 aagcacaagagacatggagttga 96
||||| ||||| |||||||||||
Sbjct: 80 aagcataagaggcatggagttga 102
>RF00656;mir-205;AADN02044974.1/39714-39814 9031:Gallus gallus
(chicken)
Length = 101
Score = 133 bits (67), Expect = 5e-31
Identities = 82/87 (94%)
Strand = Plus / Plus
Query: 6 tccatgagttctattgtccttcattccaccggagtctgtctcatatctaatcagatttca 65
|||||| ||||| ||||||||||||||||||||||||||||| || |||| |||||||||
Sbjct: 11 tccatgggttctgttgtccttcattccaccggagtctgtctcgtacctaaccagatttca 70
Query: 66 gtggagtgaagcacaagagacatggag 92
|||||||||||||||||||||||||||
Sbjct: 71 gtggagtgaagcacaagagacatggag 97
>RF00656;mir-205;ABQF01054274.1/5298-5198 59729:Taeniopygia
guttata
Length = 101
Score = 119 bits (60), Expect = 7e-27
Identities = 82/88 (93%), Gaps = 1/88 (1%)
Strand = Plus / Plus
Query: 5 ttccatgagttctattgtccttcattccaccggagtctgtctcatatctaatcagatttc 64
||||||| ||||| ||||||||||||||||||||||||||||| || |||| ||||||||
Sbjct: 11 ttccatgggttctgttgtccttcattccaccggagtctgtctc-tagctaaccagatttc 69
Query: 65 agtggagtgaagcacaagagacatggag 92
|||||||||||||||||||| |||||||
Sbjct: 70 agtggagtgaagcacaagaggcatggag 97
>RF00656;mir-205;ABRQ01315849.1/3505-3606 9813:Procavia capensis
(cape rock hyrax)
Length = 102
Score = 93.7 bits (47), Expect = 4e-19
Identities = 71/79 (89%)
Strand = Plus / Plus
Query: 14 ttctattgtccttcattccaccggagtctgtctcatatctaatcagatttcagtggagtg 73
|||| |||||||||||||||||||||||||| ||||| | || |||||||||||||||||
Sbjct: 20 ttctcttgtccttcattccaccggagtctgtttcatacccaaccagatttcagtggagtg 79
Query: 74 aagcacaagagacatggag 92
||| || |||||||||||
Sbjct: 80 aagttcaggagacatggag 98
>RF00656;mir-205;AAFC03121357.1/8897-8998 9913:Bos taurus (cattle)
Length = 102
Score = 85.7 bits (43), Expect = 1e-16
Identities = 58/63 (92%)
Strand = Plus / Plus
Query: 14 ttctattgtccttcattccaccggagtctgtctcatatctaatcagatttcagtggagtg 73
|||| ||||||||||||||||||||||||||||| || | || |||||||||||||||||
Sbjct: 20 ttctcttgtccttcattccaccggagtctgtctcgtacccaaccagatttcagtggagtg 79
Query: 74 aag 76
|||
Sbjct: 80 aag 82
>RF00656;mir-205;CAAA01026708.1/9339-9240 10090:Mus musculus
(house mouse)
Length = 100
Score = 77.8 bits (39), Expect = 2e-14
Identities = 76/87 (87%), Gaps = 1/87 (1%)
Strand = Plus / Plus
Query: 6 tccatgagttctattgtccttcattccaccggagtctgtctcatatctaatcagatttca 65
|||||| || || |||||||||||||||||||||||||||| || | || |||||||||
Sbjct: 11 tccatgggtcctcttgtccttcattccaccggagtctgtcttat-gccaaccagatttca 69
Query: 66 gtggagtgaagcacaagagacatggag 92
|||||||||||| || ||| |||||||
Sbjct: 70 gtggagtgaagctcaggaggcatggag 96
>RF00656;mir-205;AAVX01484155.1/142-243 7868:Callorhinchus milii
(ghost shark)
Length = 102
Score = 73.8 bits (37), Expect = 4e-13
Identities = 65/73 (89%), Gaps = 1/73 (1%)
Strand = Plus / Plus
Query: 20 tgtccttcattccaccggagtctgtctcatat-ctaatcagatttcagtggagtgaagca 78
||||||||||||||||||||||||| |||| | || ||||||||||||| ||||||||
Sbjct: 25 tgtccttcattccaccggagtctgtgacataaaccaaccagatttcagtggggtgaagca 84
Query: 79 caagagacatgga 91
|| ||||||||||
Sbjct: 85 catgagacatgga 97
>RF00656;mir-205;AAKN02017853.1/245570-245471 10141:Cavia
porcellus (domestic guinea pig)
Length = 100
Score = 60.0 bits (30), Expect = 6e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 13 gttctattgtccttcattccaccggagtctgtct 46
||||| ||||||||||||||||||||||||||||
Sbjct: 19 gttctcttgtccttcattccaccggagtctgtct 52
>RF00656;mir-205;AALT01450952.1/1320-1220 42254:Sorex araneus
(European shrew)
Length = 101
Score = 58.0 bits (29), Expect = 2e-08
Identities = 51/57 (89%), Gaps = 1/57 (1%)
Strand = Plus / Plus
Query: 20 tgtccttcattccaccggagtctgtctcatatctaatcagatttcagtggagtgaag 76
|||||||||||||||||||||||||||| | || ||||||||||||||||||||
Sbjct: 26 tgtccttcattccaccggagtctgtctc-tgcacaaccagatttcagtggagtgaag 81
>RF00656;mir-205;CAAB01006173.1/586-688 31033:Takifugu rubripes
Length = 103
Score = 58.0 bits (29), Expect = 2e-08
Identities = 77/91 (84%), Gaps = 4/91 (4%)
Strand = Plus / Plus
Query: 1 aatattccatgagttctattgtccttcattccaccggagtctgtct-catatctaatcag 59
||||||||||| ||||||| |||||||||||||||||||||| | ||| ||| |||
Sbjct: 10 aatattccatgtgttctat---ccttcattccaccggagtctgtatgtgtatttaaccag 66
Query: 60 atttcagtggagtgaagcacaagagacatgg 90
|||||||||| |||||| |||||||||||
Sbjct: 67 atttcagtggtgtgaagtgtaagagacatgg 97
>RF00656;mir-205;AANH01002613.1/123689-123785 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 97
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 20 tgtccttcattccaccggagtctgtct 46
|||||||||||||||||||||||||||
Sbjct: 22 tgtccttcattccaccggagtctgtct 48
>RF00656;mir-205;BAAF04011157.1/1235-1133 8090:Oryzias latipes
(Japanese medaka)
Length = 103
Score = 50.1 bits (25), Expect = 5e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 20 tgtccttcattccaccggagtctgt 44
|||||||||||||||||||||||||
Sbjct: 26 tgtccttcattccaccggagtctgt 50
>RF00656;mir-205;AL929087.4/70188-70086 7955:Danio rerio
(zebrafish)
Length = 103
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 tccttcattccaccggagtctgt 44
|||||||||||||||||||||||
Sbjct: 28 tccttcattccaccggagtctgt 50
>RF00656;mir-205;AANH01007448.1/5834-5732 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 103
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 tccttcattccaccggagtctgt 44
|||||||||||||||||||||||
Sbjct: 28 tccttcattccaccggagtctgt 50
>RF00656;mir-205;BAAE01019177.1/1934-2036 8090:Oryzias latipes
(Japanese medaka)
Length = 103
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 22 tccttcattccaccggagtctgt 44
|||||||||||||||||||||||
Sbjct: 28 tccttcattccaccggagtctgt 50
