miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00103;mir-1;AAWZ01009147.1/60407-60483 28377:Anolis
carolinensis (green anole)
Length = 77
Score = 153 bits (77), Expect = 4e-37
Identities = 77/77 (100%)
Strand = Plus / Minus
Query: 4 atcaaaaatacatacttctttacattccataacattgtatcttcatatgggtacataaag 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 77 atcaaaaatacatacttctttacattccataacattgtatcttcatatgggtacataaag 18
Query: 64 aagtatgtgctctcaac 80
|||||||||||||||||
Sbjct: 17 aagtatgtgctctcaac 1
>RF00103;mir-1;AC147912.2/160163-160239 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 77
Score = 113 bits (57), Expect = 3e-25
Identities = 63/65 (96%)
Strand = Plus / Minus
Query: 7 aaaaatacatacttctttacattccataacattgtatcttcatatgggtacataaagaag 66
|||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||
Sbjct: 74 aaaaatacatacttctttacattccatagcattgtatgttcatatgggtacataaagaag 15
Query: 67 tatgt 71
|||||
Sbjct: 14 tatgt 10
>RF00103;mir-1;AANU01221577.1/6692-6768 9544:Macaca mulatta
(rhesus monkey)
Length = 77
Score = 105 bits (53), Expect = 8e-23
Identities = 65/69 (94%)
Strand = Plus / Minus
Query: 8 aaaatacatacttctttacattccataacattgtatcttcatatgggtacataaagaagt 67
||||||||||||||||||||||||||| | |||||| |||||||||||||||||||||||
Sbjct: 73 aaaatacatacttctttacattccatagccttgtatgttcatatgggtacataaagaagt 14
Query: 68 atgtgctct 76
|||| ||||
Sbjct: 13 atgtactct 5
>RF00103;mir-1;AALT01502699.1/11496-11572 42254:Sorex araneus
(European shrew)
Length = 77
Score = 101 bits (51), Expect = 1e-21
Identities = 66/71 (92%)
Strand = Plus / Minus
Query: 6 caaaaatacatacttctttacattccataacattgtatcttcatatgggtacataaagaa 65
||||| ||||||||||||||||||||||| |||| ||| |||||||||||||||||||||
Sbjct: 75 caaaagtacatacttctttacattccatagcattctatgttcatatgggtacataaagaa 16
Query: 66 gtatgtgctct 76
|||||| ||||
Sbjct: 15 gtatgtactct 5
>RF00103;mir-1;ABRQ01120821.1/5388-5463 9813:Procavia capensis
(cape rock hyrax)
Length = 76
Score = 101 bits (51), Expect = 1e-21
Identities = 67/71 (94%), Gaps = 1/71 (1%)
Strand = Plus / Minus
Query: 6 caaaaatacatacttctttacattccataacattgtatcttcatatgggtacataaagaa 65
||||||||||||||||||||||||||||| |||| ||| |||||||||||||||||||||
Sbjct: 74 caaaaatacatacttctttacattccatagcatt-tatgttcatatgggtacataaagaa 16
Query: 66 gtatgtgctct 76
|||||| ||||
Sbjct: 15 gtatgtactct 5
>RF00103;mir-1;BAAE01219800.1/733-656 8090:Oryzias latipes
(Japanese medaka)
Length = 78
Score = 85.7 bits (43), Expect = 8e-17
Identities = 59/63 (93%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 10 aatacatacttctttacattccataacattg-tatcttcatatgggtacataaagaagta 68
||||||||||||||||||||||||| | || ||||||||||||||||||||||||||||
Sbjct: 72 aatacatacttctttacattccatagctttcatatcttcatatgggtacataaagaagta 13
Query: 69 tgt 71
|||
Sbjct: 12 tgt 10
>RF00103;mir-1;AAVX01053845.1/1717-1792 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 69.9 bits (35), Expect = 5e-12
Identities = 60/67 (89%), Gaps = 1/67 (1%)
Strand = Plus / Minus
Query: 6 caaaaatacatacttctttacattccataacattgtatcttcatatgggtacataaagaa 65
||||||||||||||||||||||||||||| | | || |||||||||||| ||||||||
Sbjct: 74 caaaaatacatacttctttacattccatagc-tgttaagttcatatgggtatataaagaa 16
Query: 66 gtatgtg 72
|||||||
Sbjct: 15 gtatgtg 9
>RF00103;mir-1;CAAA01046548.1/3034-3110 10090:Mus musculus (house
mouse)
Length = 77
Score = 63.9 bits (32), Expect = 3e-10
Identities = 56/64 (87%)
Strand = Plus / Minus
Query: 9 aaatacatacttctttacattccataacattgtatcttcatatgggtacataaagaagta 68
|||||||||||||||||||||||||| | | | | |||||||||| | |||||||||||
Sbjct: 72 aaatacatacttctttacattccatagcttagcaggttcatatgggcatataaagaagta 13
Query: 69 tgtg 72
||||
Sbjct: 12 tgtg 9
>RF00103;mir-1;CAAB01000636.1/82977-83054 31033:Takifugu rubripes
Length = 78
Score = 61.9 bits (31), Expect = 1e-09
Identities = 56/63 (88%), Gaps = 1/63 (1%)
Strand = Plus / Minus
Query: 10 aatacatacttctttacattccataac-attgtatcttcatatgggtacataaagaagta 68
||||||||||||||||||||||||| || ||| | ||||||||||||||||||||||
Sbjct: 72 aatacatacttctttacattccatagttatcatatgtccatatgggtacataaagaagta 13
Query: 69 tgt 71
|||
Sbjct: 12 tgt 10
>RF00103;mir-1;AAVX01164741.1/393-468 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 6 caaaaatacatacttctttacattccata 34
|||||||||||||||||||||||||||||
Sbjct: 74 caaaaatacatacttctttacattccata 46
>RF00103;mir-1;AADN02019229.1/42946-42870 9031:Gallus gallus
(chicken)
Length = 77
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 9 aaatacatacttctttacattccata 34
||||||||||||||||||||||||||
Sbjct: 72 aaatacatacttctttacattccata 47
>RF00103;mir-1;ABKE01004849.1/5673-5592 54126:Pristionchus
pacificus
Length = 82
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 12 tacatacttctttacattccataac 36
|||||||||||||||||||||||||
Sbjct: 74 tacatacttctttacattccataac 50
>RF00103;mir-1;AAGJ02015940.1/12697-12776 7668:Strongylocentrotus
purpuratus
Length = 80
Score = 50.1 bits (25), Expect = 4e-06
Identities = 25/25 (100%)
Strand = Plus / Minus
Query: 10 aatacatacttctttacattccata 34
|||||||||||||||||||||||||
Sbjct: 74 aatacatacttctttacattccata 50
>RF00103;mir-1;CABB01004866.1/4222-4314 6306:Meloidogyne incognita
(southern root-knot nematode)
Length = 93
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 12 tacatacttctttacattccataa 35
||||||||||||||||||||||||
Sbjct: 85 tacatacttctttacattccataa 62
>RF00103;mir-1;AAGV020639359.1/176-251 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 76
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 11 atacatacttctttacattccata 34
||||||||||||||||||||||||
Sbjct: 69 atacatacttctttacattccata 46
>RF00103;mir-1;AAQR01319106.1/4854-4930 30611:Otolemur garnettii
(small-eared galago)
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 40/44 (90%), Gaps = 1/44 (2%)
Strand = Plus / Minus
Query: 29 tccataacattgtatctt-catatgggtacataaagaagtatgt 71
|||||| |||||||| || ||||||||||||||| |||||||||
Sbjct: 53 tccatagcattgtatgtttcatatgggtacataacgaagtatgt 10
>RF00103;mir-1;ABRQ01775995.1/455-531 9813:Procavia capensis (cape
rock hyrax)
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 11 atacatacttctttacattccata 34
||||||||||||||||||||||||
Sbjct: 70 atacatacttctttacattccata 47
>RF00103;mir-1;BAAF04064761.1/1030-1106 8090:Oryzias latipes
(Japanese medaka)
Length = 77
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 11 atacatacttctttacattccata 34
||||||||||||||||||||||||
Sbjct: 70 atacatacttctttacattccata 47
>RF00103;mir-1;ABEP02026713.1/2484-2559 7739:Branchiostoma
floridae (Florida lancelet)
Length = 76
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 11 atacatacttctttacattccata 34
||||||||||||||||||||||||
Sbjct: 69 atacatacttctttacattccata 46
>RF00103;mir-1;ABIR01002879.1/50521-50595 6334:Trichinella
spiralis
Length = 75
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 12 tacatacttctttacattccata 34
|||||||||||||||||||||||
Sbjct: 67 tacatacttctttacattccata 45
>RF00103;mir-1;ABLE02030552.1/3109-3195 281687:Caenorhabditis
japonica
Length = 87
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 12 tacatacttctttacattccata 34
|||||||||||||||||||||||
Sbjct: 79 tacatacttctttacattccata 57
>RF00103;mir-1;AAGD02012398.1/27745-27823 31234:Caenorhabditis
remanei
Length = 79
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 12 tacatacttctttacattccata 34
|||||||||||||||||||||||
Sbjct: 71 tacatacttctttacattccata 49
>RF00103;mir-1;CAAC02000511.1/295307-295229 6238:Caenorhabditis
briggsae
Length = 79
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 12 tacatacttctttacattccata 34
|||||||||||||||||||||||
Sbjct: 71 tacatacttctttacattccata 49
>RF00103;mir-1;AAYZ01364871.1/459-535 9978:Ochotona princeps
(American pika)
Length = 77
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 12 tacatacttctttacattccata 34
|||||||||||||||||||||||
Sbjct: 69 tacatacttctttacattccata 47
>RF00103;mir-1;AADN02043827.1/39065-38987 9031:Gallus gallus
(chicken)
Length = 79
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 11 atacatacttctttacattccataac 36
||||||||||||| ||||||||||||
Sbjct: 72 atacatacttcttaacattccataac 47
>RF00103;mir-1;AAZO01007144.1/49277-49350 121224:Pediculus humanus
corporis (human body louse)
Length = 74
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 14 catacttctttacattccataa 35
||||||||||||||||||||||
Sbjct: 64 catacttctttacattccataa 43
