miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00027;let-7;AADN02013953.1/12681-12597 9031:Gallus gallus
(chicken)
Length = 85
Score = 115 bits (58), Expect = 1e-25
Identities = 76/82 (92%)
Strand = Plus / Plus
Query: 11 ggaagaggtagtaggttgcatagttttagggcagtggttttgcccaaaaggagttaacta 70
|||||||||||| ||||||||||||||||||||| | |||||| || |||||| ||||||
Sbjct: 4 ggaagaggtagtgggttgcatagttttagggcagggattttgctcacaaggaggtaacta 63
Query: 71 tacaacctgctgcctttcttag 92
||||||||||||||||||||||
Sbjct: 64 tacaacctgctgcctttcttag 85
>RF00027;let-7;AAVX01008163.1/128-212 7868:Callorhinchus milii
(ghost shark)
Length = 85
Score = 113 bits (57), Expect = 4e-25
Identities = 75/81 (92%)
Strand = Plus / Plus
Query: 8 ctgggaagaggtagtaggttgcatagttttagggcagtggttttgcccaaaaggagttaa 67
||||| ||||||||||||||||||||||| ||||||| | |||||||| ||||||| |||
Sbjct: 1 ctgggtagaggtagtaggttgcatagtttgagggcagggattttgccccaaaggagataa 60
Query: 68 ctatacaacctgctgcctttc 88
|||||||||||||||||||||
Sbjct: 61 ctatacaacctgctgcctttc 81
>RF00027;let-7;ABRT010188166.1/5185-5269 9478:Tarsius syrichta
(Philippine tarsier)
Length = 85
Score = 73.8 bits (37), Expect = 4e-13
Identities = 64/73 (87%)
Strand = Plus / Plus
Query: 16 aggtagtaggttgcatagttttagggcagtggttttgcccaaaaggagttaactatacaa 75
|||| |||||||||||||||||||||||| ||||||| ||| ||||| || ||||| |
Sbjct: 9 aggttgtaggttgcatagttttagggcagcggttttgtccactaggaggtacctatatga 68
Query: 76 cctgctgcctttc 88
|||||||||||||
Sbjct: 69 cctgctgcctttc 81
>RF00027;let-7;ABDC01518424.1/1820-1902 30608:Microcebus murinus
(gray mouse lemur)
Length = 83
Score = 63.9 bits (32), Expect = 4e-10
Identities = 62/71 (87%), Gaps = 2/71 (2%)
Strand = Plus / Plus
Query: 22 taggttgcatagttttagggcagtggttttgcccaaaaggagttaactatacaacctgct 81
|||||| | |||||| ||||||| | ||||| ||| |||| ||||||||||||||||||
Sbjct: 15 taggttacgtagtttcagggcagagattttgtccataagg--ttaactatacaacctgct 72
Query: 82 gcctttcttag 92
|||||||||||
Sbjct: 73 gcctttcttag 83
>RF00027;let-7;AAVX01108779.1/886-806 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 9 tgggaagaggtagtaggttgcatagttttaggg 41
||||| |||||||||||||| ||||||||||||
Sbjct: 2 tgggatgaggtagtaggttgtatagttttaggg 34
>RF00027;let-7;AAVX01586337.1/294-214 7868:Callorhinchus milii
(ghost shark)
Length = 81
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 9 tgggaagaggtagtaggttgcatagttttaggg 41
||||| |||||||||||||| ||||||||||||
Sbjct: 2 tgggatgaggtagtaggttgtatagttttaggg 34
>RF00027;let-7;AAWZ01027397.1/1152-1066 28377:Anolis carolinensis
(green anole)
Length = 87
Score = 46.1 bits (23), Expect = 8e-05
Identities = 62/74 (83%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 15 gaggtagtaggttgcatagttttagggcagtggttttgcccaaa--aggagttaactata 72
|||||||||||||| | |||| |||| ||| |||||||| || ||||| ||||||||
Sbjct: 8 gaggtagtaggttgtgtggtttcagggtagtcattttgccccaatcaggagataactata 67
Query: 73 caacctgctgcctt 86
|||||| |||||||
Sbjct: 68 caacctactgcctt 81
>RF00027;let-7;BAAF04050050.1/5012-4932 8090:Oryzias latipes
(Japanese medaka)
Length = 81
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 gaggtagtaggttgcatagttttaggg 41
|||||||||||||| ||||||||||||
Sbjct: 8 gaggtagtaggttgtatagttttaggg 34
>RF00027;let-7;BAAE01055973.1/4881-4962 8090:Oryzias latipes
(Japanese medaka)
Length = 82
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 gaggtagtaggttgcatagttttaggg 41
|||||||||||||| ||||||||||||
Sbjct: 8 gaggtagtaggttgtatagttttaggg 34
>RF00027;let-7;AAVX01031590.1/1741-1655 7868:Callorhinchus milii
(ghost shark)
Length = 87
Score = 46.1 bits (23), Expect = 8e-05
Identities = 62/74 (83%), Gaps = 2/74 (2%)
Strand = Plus / Plus
Query: 15 gaggtagtaggttgcatagttttagggcagtggttttg--cccaaaaggagttaactata 72
|||||||||||||| |||||| |||| |||| |||| |||| ||||| ||||||||
Sbjct: 8 gaggtagtaggttgtgtagtttcagggtagtgatttttgccccatcaggagataactata 67
Query: 73 caacctgctgcctt 86
|||||| |||||||
Sbjct: 68 caacctactgcctt 81
>RF00027;let-7;AAWZ01028874.1/2440-2520 28377:Anolis carolinensis
(green anole)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 8 ctgggaagaggtagtaggttgcatagttttaggg 41
|||||| |||||||||| ||| ||||||||||||
Sbjct: 1 ctgggatgaggtagtagattgtatagttttaggg 34
>RF00027;let-7;AANH01006181.1/186487-186407 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 81
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 9 tgggaagaggtagtaggttgcatagtttta 38
||||| |||||||||||||| |||||||||
Sbjct: 2 tgggatgaggtagtaggttgtatagtttta 31
>RF00027;let-7;BAAE01218263.1/598-683 8090:Oryzias latipes
(Japanese medaka)
Length = 86
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 53 cccaaaaggagttaactatacaacctgctgcctt 86
|||| |||||| |||||||||||||| |||||||
Sbjct: 47 cccataaggagctaactatacaacctactgcctt 80
