miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00693;mir-147;BX934528.1/415-484 9031:Gallus gallus (chicken)
Length = 70
Score = 91.7 bits (46), Expect = 2e-18
Identities = 64/70 (91%)
Strand = Plus / Plus
Query: 16 aatctagtggaatcacttccgcacaaactagatgaatgaaaccagtgtgcggaaatgctt 75
||||||||||||||||||| ||||||||| || | ||||| ||||||||||||||||||
Sbjct: 1 aatctagtggaatcacttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 60
Query: 76 ctgctacatt 85
||||||||||
Sbjct: 61 ctgctacatt 70
>RF00693;mir-147;ABRQ01122655.1/595-663 9813:Procavia capensis
(cape rock hyrax)
Length = 69
Score = 67.9 bits (34), Expect = 2e-11
Identities = 62/70 (88%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 16 aatctagtggaatcacttccgcacaaactagatgaatgaaaccagtgtgcggaaatgctt 75
|||||||||||| |||||| ||||||||||||| ||| | |||||||||||| |||||
Sbjct: 1 aatctagtggaaacacttctgcacaaactagat-tatggatacagtgtgcggaagtgctt 59
Query: 76 ctgctacatt 85
||||||||||
Sbjct: 60 ctgctacatt 69
>RF00693;mir-147;AAHX01006722.1/12190-12258 10116:Rattus
norvegicus (Norway rat)
Length = 69
Score = 60.0 bits (30), Expect = 6e-09
Identities = 61/70 (87%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 16 aatctagtggaatcacttccgcacaaactagatgaatgaaaccagtgtgcggaaatgctt 75
|||||||||||| |||||| ||||||||| ||| ||| ||||||||| |||||||||
Sbjct: 1 aatctagtggaaacacttctgcacaaactcgattt-tgatgccagtgtgcagaaatgctt 59
Query: 76 ctgctacatt 85
||||||||||
Sbjct: 60 ctgctacatt 69
>RF00693;mir-147;ACBE01108147.1/7076-7008 9685:Felis catus
(domestic cat)
Length = 69
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 53 gaaaccagtgtgcggaaatgcttctgctaca 83
|||||||||||| ||||||||||||||||||
Sbjct: 37 gaaaccagtgtgtggaaatgcttctgctaca 67
>RF00693;mir-147;ABQO010540357.1/344-413 9315:Macropus eugenii
(tammar wallaby)
Length = 70
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 52 tgaaaccagtgtgcggaaatgcttctgctacatt 85
|||||||||||||| ||| |||||||||||||||
Sbjct: 37 tgaaaccagtgtgcagaagtgcttctgctacatt 70
>RF00693;mir-147;AAFR03008278.1/59401-59332 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 70
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 52 tgaaaccagtgtgcggaaatgcttctgctacatt 85
|||||||||||||| ||| |||||||||||||||
Sbjct: 37 tgaaaccagtgtgcagaagtgcttctgctacatt 70
>RF00693;mir-147;ABRN01322131.1/5297-5220 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 78
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 52 tgaaaccagtgtgcggaaatgcttctgctacatt 85
||||||||||||| ||||||||||||| ||||||
Sbjct: 45 tgaaaccagtgtgtggaaatgcttctgttacatt 78
>RF00693;mir-147;AANU01202048.1/11100-11029 9544:Macaca mulatta
(rhesus monkey)
Length = 72
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 52 tgaaaccagtgtgcggaaatgcttctgctacatt 85
|||| |||||||| ||||||||||||||||||||
Sbjct: 39 tgaagccagtgtgtggaaatgcttctgctacatt 72
>RF00693;mir-147;ABRN01165333.1/9979-9911 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 69
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 53 gaaaccagtgtgcggaaatgcttctgcta 81
|||||||||||| ||||||||||||||||
Sbjct: 37 gaaaccagtgtgtggaaatgcttctgcta 65
>RF00693;mir-147;AAWR02019028.1/76654-76723 9796:Equus caballus
(horse)
Length = 70
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 58 cagtgtgcggaaatgcttctgctacatt 85
|||||||| |||||||||||||||||||
Sbjct: 43 cagtgtgccgaaatgcttctgctacatt 70
>RF00693;mir-147;AAYZ01195432.1/14535-14604 9978:Ochotona princeps
(American pika)
Length = 70
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 58 cagtgtgcggaaatgcttctgctacatt 85
|||||||||||| |||||||||||||||
Sbjct: 43 cagtgtgcggaagtgcttctgctacatt 70
>RF00693;mir-147;AAVX01307041.1/135-202 7868:Callorhinchus milii
(ghost shark)
Length = 68
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 58 cagtgtgcggaaatgcttctgctacatt 85
||||||||||||||||||||| ||||||
Sbjct: 41 cagtgtgcggaaatgcttctggtacatt 68
>RF00693;mir-147;ABPJ01071875.1/477-549 35575:Mchenga conophoros
Length = 73
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 58 cagtgtgcggaaatgcttctgct 80
|||||||||||||||||||||||
Sbjct: 46 cagtgtgcggaaatgcttctgct 68
>RF00693;mir-147;BAAF04016950.1/22862-22934 8090:Oryzias latipes
(Japanese medaka)
Length = 73
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 58 cagtgtgcggaaatgcttctgct 80
|||||||||||||||||||||||
Sbjct: 46 cagtgtgcggaaatgcttctgct 68
>RF00693;mir-147;AAGV020206622.1/526-457 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 52 tgaaaccagtgtgcggaaatgcttctgctacatt 85
||||||||| ||| | ||||||||||||||||||
Sbjct: 37 tgaaaccagcgtgtgaaaatgcttctgctacatt 70
>RF00693;mir-147;ABRP01017253.1/4570-4501 132908:Pteropus vampyrus
(large flying fox)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 agtgtgcggaaatgcttctgctacat 84
|||||| |||||||||||||||||||
Sbjct: 44 agtgtgtggaaatgcttctgctacat 69
>RF00693;mir-147;AAKN02027666.1/17442-17511 10141:Cavia porcellus
(domestic guinea pig)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 56 accagtgtgcggaaatgcttctgcta 81
|||||||||||||| |||||||||||
Sbjct: 41 accagtgtgcggaagtgcttctgcta 66
