miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00684;mir-122;AAWZ01008604.1/2344-2417 28377:Anolis
carolinensis (green anole)
Length = 74
Score = 147 bits (74), Expect = 3e-35
Identities = 74/74 (100%)
Strand = Plus / Plus
Query: 14 tggagctgtggagtgtgacaatggtgtttgtatccaatccgtcaaacgccattatcacac 73
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tggagctgtggagtgtgacaatggtgtttgtatccaatccgtcaaacgccattatcacac 60
Query: 74 taaatagctactgc 87
||||||||||||||
Sbjct: 61 taaatagctactgc 74
>RF00684;mir-122;BAAE01201314.1/775-848 8090:Oryzias latipes
(Japanese medaka)
Length = 74
Score = 89.7 bits (45), Expect = 6e-18
Identities = 63/69 (91%)
Strand = Plus / Plus
Query: 16 gagctgtggagtgtgacaatggtgtttgtatccaatccgtcaaacgccattatcacacta 75
||||||||||||||||||||||||||||| ||| | |||||||||||||||||||||
Sbjct: 3 gagctgtggagtgtgacaatggtgtttgtttcctgcctatcaaacgccattatcacacta 62
Query: 76 aatagctac 84
|||||||||
Sbjct: 63 aatagctac 71
>RF00684;mir-122;AABR04103114.1/951-878 10116:Rattus norvegicus
(Norway rat)
Length = 74
Score = 87.7 bits (44), Expect = 2e-17
Identities = 65/72 (90%)
Strand = Plus / Plus
Query: 16 gagctgtggagtgtgacaatggtgtttgtatccaatccgtcaaacgccattatcacacta 75
||||| ||||||||||||||||||||||| ||||| | ||||||||||| |||||||||
Sbjct: 3 gagctctggagtgtgacaatggtgtttgtgtccaaaacatcaaacgccatcatcacacta 62
Query: 76 aatagctactgc 87
|| |||||||||
Sbjct: 63 aacagctactgc 74
>RF00684;mir-122;CR925730.6/26724-26798 7955:Danio rerio
(zebrafish)
Length = 75
Score = 87.7 bits (44), Expect = 2e-17
Identities = 64/69 (92%), Gaps = 5/69 (7%)
Strand = Plus / Plus
Query: 16 gagctgtggagtgtgacaatggtgtttgtatccaatc---cgtcaaacgccattatcaca 72
|||||||||||||||||||||||||||||||| ||| ||||||||||||||||||||
Sbjct: 3 gagctgtggagtgtgacaatggtgtttgtatc--atctgtcgtcaaacgccattatcaca 60
Query: 73 ctaaatagc 81
|||||||||
Sbjct: 61 ctaaatagc 69
>RF00684;mir-122;AAVX01098255.1/690-764 7868:Callorhinchus milii
(ghost shark)
Length = 75
Score = 61.9 bits (31), Expect = 1e-09
Identities = 53/59 (89%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 22 tggagtgtgacaatggtgtttgtatccaatc-cgtcaaacgccattatcacactaaata 79
|||||||||||||||||||||||| || | | |||||||||||||||||||||||||
Sbjct: 9 tggagtgtgacaatggtgtttgtaatcactgacatcaaacgccattatcacactaaata 67
