miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00693;mir-147;ABQO010540357.1/344-413 9315:Macropus eugenii
(tammar wallaby)
Length = 70
Score = 107 bits (54), Expect = 3e-23
Identities = 60/62 (96%)
Strand = Plus / Plus
Query: 23 ggaaacatttctgcacaaactatactactgaaaccagtgtgcggaagtgcttctgctaca 82
||||||||||||||||| |||||||||||||||||||||||| |||||||||||||||||
Sbjct: 9 ggaaacatttctgcacacactatactactgaaaccagtgtgcagaagtgcttctgctaca 68
Query: 83 tt 84
||
Sbjct: 69 tt 70
>RF00693;mir-147;AAFR03008278.1/59401-59332 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 70
Score = 99.6 bits (50), Expect = 6e-21
Identities = 65/70 (92%)
Strand = Plus / Plus
Query: 15 aatctagcggaaacatttctgcacaaactatactactgaaaccagtgtgcggaagtgctt 74
|||||||| ||||||| |||||| |||||| ||||||||||||||||||| |||||||||
Sbjct: 1 aatctagctgaaacatctctgcataaactagactactgaaaccagtgtgcagaagtgctt 60
Query: 75 ctgctacatt 84
||||||||||
Sbjct: 61 ctgctacatt 70
>RF00693;mir-147;BX934528.1/415-484 9031:Gallus gallus (chicken)
Length = 70
Score = 83.8 bits (42), Expect = 4e-16
Identities = 63/70 (90%)
Strand = Plus / Plus
Query: 15 aatctagcggaaacatttctgcacaaactatactactgaaaccagtgtgcggaagtgctt 74
||||||| |||| || ||||||||||||| |||||||||| |||||||||||| |||||
Sbjct: 1 aatctagtggaatcacttctgcacaaacttgactactgaaatcagtgtgcggaaatgctt 60
Query: 75 ctgctacatt 84
||||||||||
Sbjct: 61 ctgctacatt 70
>RF00693;mir-147;AAFR03018157.1/212021-212090 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 70
Score = 81.8 bits (41), Expect = 2e-15
Identities = 62/69 (89%)
Strand = Plus / Plus
Query: 16 atctagcggaaacatttctgcacaaactatactactgaaaccagtgtgcggaagtgcttc 75
|||||| |||||||| ||||||||||||| |||||| ||||||||||| |||| |||||
Sbjct: 2 atctagtggaaacatctctgcacaaactagactactaaaaccagtgtgtagaagggcttc 61
Query: 76 tgctacatt 84
|||||||||
Sbjct: 62 tgctacatt 70
>RF00693;mir-147;ABRQ01122655.1/595-663 9813:Procavia capensis
(cape rock hyrax)
Length = 69
Score = 67.9 bits (34), Expect = 2e-11
Identities = 62/70 (88%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 15 aatctagcggaaacatttctgcacaaactatactactgaaaccagtgtgcggaagtgctt 74
||||||| ||||||| |||||||||||||| | || || | ||||||||||||||||||
Sbjct: 1 aatctagtggaaacacttctgcacaaactagatta-tggatacagtgtgcggaagtgctt 59
Query: 75 ctgctacatt 84
||||||||||
Sbjct: 60 ctgctacatt 69
>RF00693;mir-147;AAKN02005203.1/37099-37168 10141:Cavia porcellus
(domestic guinea pig)
Length = 70
Score = 56.0 bits (28), Expect = 9e-08
Identities = 52/60 (86%)
Strand = Plus / Plus
Query: 25 aaacatttctgcacaaactatactactgaaaccagtgtgcggaagtgcttctgctacatt 84
|||||||||||||||||| | |||| |||| |||||||| || |||||||||||||||
Sbjct: 11 aaacatttctgcacaaaccagactattgaatccagtgtggggcgatgcttctgctacatt 70
>RF00693;mir-147;AAYZ01195432.1/14535-14604 9978:Ochotona princeps
(American pika)
Length = 70
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 57 cagtgtgcggaagtgcttctgctacatt 84
||||||||||||||||||||||||||||
Sbjct: 43 cagtgtgcggaagtgcttctgctacatt 70
>RF00693;mir-147;AANG01591628.1/889-825 9685:Felis catus (domestic
cat)
Length = 65
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 15 aatctagcggaaacatttctgcacaaacta 44
|||||| |||||||||||||||||||||||
Sbjct: 1 aatctaacggaaacatttctgcacaaacta 30
>RF00693;mir-147;AAKN02027666.1/17442-17511 10141:Cavia porcellus
(domestic guinea pig)
Length = 70
Score = 52.0 bits (26), Expect = 1e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 55 accagtgtgcggaagtgcttctgcta 80
||||||||||||||||||||||||||
Sbjct: 41 accagtgtgcggaagtgcttctgcta 66
>RF00693;mir-147;AAFR03003088.1/227501-227425 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 77
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 16 atctagcggaaacatttctgcacaaac 42
||||||| |||||||||||||||||||
Sbjct: 2 atctagcagaaacatttctgcacaaac 28
>RF00693;mir-147;ABRN01322131.1/5297-5220 9739:Tursiops truncatus
(bottlenosed dolphin)
Length = 78
Score = 46.1 bits (23), Expect = 8e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 46 actactgaaaccagtgtgcggaagtgcttctgctacatt 84
|||| ||||||||||||| |||| |||||||| ||||||
Sbjct: 40 actattgaaaccagtgtgtggaaatgcttctgttacatt 78
>RF00693;mir-147;ACBE01108147.1/7076-7008 9685:Felis catus
(domestic cat)
Length = 69
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 52 gaaaccagtgtgcggaagtgcttctgctaca 82
|||||||||||| |||| |||||||||||||
Sbjct: 37 gaaaccagtgtgtggaaatgcttctgctaca 67
>RF00693;mir-147;AANU01202048.1/11100-11029 9544:Macaca mulatta
(rhesus monkey)
Length = 72
Score = 46.1 bits (23), Expect = 8e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 46 actactgaaaccagtgtgcggaagtgcttctgctacatt 84
|||| |||| |||||||| |||| |||||||||||||||
Sbjct: 34 actattgaagccagtgtgtggaaatgcttctgctacatt 72
>RF00693;mir-147;ABQO010681913.1/1802-1733 9315:Macropus eugenii
(tammar wallaby)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 15 aatctagcggaaacatttctgcacaaacta 44
||||||| ||||||||||||||||| ||||
Sbjct: 1 aatctagtggaaacatttctgcacagacta 30
>RF00693;mir-147;AAGV020206622.1/526-457 9361:Dasypus novemcinctus
(nine-banded armadillo)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 23 ggaaacatttctgcacaaactatactactgaaaccagtgtgcggaagtgcttctgctaca 82
||||||| ||||| ||| || | |||| ||||||||| ||| | || |||||||||||||
Sbjct: 9 ggaaacagttctgtacacaccagactattgaaaccagcgtgtgaaaatgcttctgctaca 68
Query: 83 tt 84
||
Sbjct: 69 tt 70
>RF00693;mir-147;AAEX02028076.1/21466-21402 9615:Canis lupus
familiaris (dog)
Length = 65
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 23 ggaaacatttctgcacaaacta 44
||||||||||||||||||||||
Sbjct: 9 ggaaacatttctgcacaaacta 30
