miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01061;mir-548;CABD01203916.1/289-206 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 63.9 bits (32), Expect = 3e-10
Identities = 41/44 (93%)
Strand = Plus / Plus
Query: 31 aaagtaatggcaaaaatagcaattactttcacaccaacctaaca 74
||||||||||||||||| ||||||||||| |||||||||||||
Sbjct: 41 aaagtaatggcaaaaatcgcaattactttggcaccaacctaaca 84
>RF01061;mir-548;AC187360.3/56002-56085 9601:Pongo abelii
(Sumatran orangutan)
Length = 84
Score = 56.0 bits (28), Expect = 8e-08
Identities = 40/44 (90%)
Strand = Plus / Plus
Query: 29 caaaagtaatggcaaaaatagcaattactttcacaccaacctaa 72
|||||||||| ||||||| |||||||||||| |||||||||||
Sbjct: 39 caaaagtaatagcaaaaactgcaattactttcgcaccaacctaa 82
>RF01061;mir-548;CABD01142179.1/4659-4576 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 54.0 bits (27), Expect = 3e-07
Identities = 39/43 (90%)
Strand = Plus / Plus
Query: 30 aaaagtaatggcaaaaatagcaattactttcacaccaacctaa 72
|||||| |||||||||||| |||||||||| |||||||||||
Sbjct: 40 aaaagtcatggcaaaaataacaattacttttgcaccaacctaa 82
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 35 taatggcaaaaatagcaattactttcacaccaacctaa 72
|||||||||||| |||| ||||||| |||||||||||
Sbjct: 40 taatggcaaaaacagcacttacttttgcaccaacctaa 3
>RF01061;mir-548;AADA01058244.1/14119-14036 9598:Pan troglodytes
(chimpanzee)
Length = 84
Score = 52.0 bits (26), Expect = 1e-06
Identities = 38/42 (90%)
Strand = Plus / Plus
Query: 31 aaagtaatggcaaaaatagcaattactttcacaccaacctaa 72
||||||||||||||||| ||||||||||| | |||||||||
Sbjct: 41 aaagtaatggcaaaaatcgcaattacttttgccccaacctaa 82
>RF01061;mir-548;AANU01015630.1/1898-1815 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Minus
Query: 35 taatggcaaaaatagcaattactttcacaccaacctaa 72
|||||||||||| |||||||||||| ||| ||||||||
Sbjct: 40 taatggcaaaaacagcaattacttttacaacaacctaa 3
>RF01061;mir-548;AADC01054028.1/147-64 9606:Homo sapiens (human)
Length = 84
Score = 50.1 bits (25), Expect = 5e-06
Identities = 40/45 (88%)
Strand = Plus / Minus
Query: 30 aaaagtaatggcaaaaatagcaattactttcacaccaacctaaca 74
||||||||||||||||| |||||||||| |||||||||||||
Sbjct: 45 aaaagtaatggcaaaaagcacaattacttttgcaccaacctaaca 1
>RF01061;mir-548;AADC01102129.1/13137-13054 9606:Homo sapiens
(human)
Length = 84
Score = 50.1 bits (25), Expect = 5e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 31 aaagtaatggcaaaaatagcaattactttcacaccaaccta 71
|||||||||||||||| ||||||||||| ||||||||||
Sbjct: 41 aaagtaatggcaaaaaccgcaattacttttgcaccaaccta 81
>RF01061;mir-548;AC074323.4/95680-95597 9606:Homo sapiens (human)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 30 aaaagtaatggcaaaaatagcaattactttcacaccaacc 69
||||||||||||||||| ||||||||||| ||||||||
Sbjct: 40 aaaagtaatggcaaaaaccgcaattacttttgcaccaacc 79
>RF01061;mir-548;AC003681.1/24588-24671 9606:Homo sapiens (human)
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 16 tattagattggtgcaaaagtaat 38
|||||||||||||||||||||||
Sbjct: 84 tattagattggtgcaaaagtaat 62
>RF01061;mir-548;ABSL01062835.1/19063-18980 9606:Homo sapiens
(human)
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 30 aaaagtaatggcaaaaatagcaattactttcacaccaacctaa 72
||||||||||||||||| |||||||||| |||||||||||
Sbjct: 45 aaaagtaatggcaaaaaccacaattacttttgcaccaacctaa 3
>RF01061;mir-548;CABD01089019.1/6160-6243 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 38/43 (88%)
Strand = Plus / Minus
Query: 30 aaaagtaatggcaaaaatagcaattactttcacaccaacctaa 72
||||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 45 aaaagtagtggcaaaaaccgcaattacttttgcaccaacctaa 3
>RF01061;mir-548;AANU01106767.1/8226-8143 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 30 aaaagtaatggcaaaaatagcaattactttcacaccaacctaa 72
||||||||||||||||| ||||||||||| ||||| |||||
Sbjct: 40 aaaagtaatggcaaaaaccgcaattacttttgcaccagcctaa 82
>RF01061;mir-548;AANU01260291.1/17494-17411 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 30 aaaagtaatggcaaaaatagcaattactttcacaccaacctaa 72
||||||||| |||||||| ||||||| ||| |||||||||||
Sbjct: 40 aaaagtaattgcaaaaatcgcaattatttttgcaccaacctaa 82
>RF01061;mir-548;AANU01285209.1/57947-57864 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 38/43 (88%)
Strand = Plus / Plus
Query: 30 aaaagtaatggcaaaaatagcaattactttcacaccaacctaa 72
|||||||||| |||||| ||||||||||| |||||||||||
Sbjct: 40 aaaagtaatgacaaaaaccgcaattacttttgcaccaacctaa 82
>RF01061;mir-548;ABGA01209240.1/4651-4734 9601:Pongo abelii
(Sumatran orangutan)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 30 aaaagtaatggcaaaaatagcaattactttcacaccaaccta 71
|||||||||| |||||| ||||||||||| ||||||||||
Sbjct: 40 aaaagtaatgccaaaaactgcaattacttttgcaccaaccta 81
>RF01061;mir-548;AADC01134614.1/198131-198048 9606:Homo sapiens
(human)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 31 aaagtaatggcaaaaatagcaattactttcacaccaacctaa 72
|||||||||||| |||| ||||||||||| |||||| ||||
Sbjct: 41 aaagtaatggcagaaattgcaattacttttgcaccaagctaa 82
>RF01061;mir-548;AADB02001154.1/69220-69137 9606:Homo sapiens
(human)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 16 tattagattggtgcaaaagtaatggc 41
|||||| |||||||||||||||||||
Sbjct: 1 tattaggttggtgcaaaagtaatggc 26
>RF01061;mir-548;CABD01001244.1/12488-12571 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 30 aaaagtaatggcaaaaatagcaatta 55
||||||||||||||||| ||||||||
Sbjct: 40 aaaagtaatggcaaaaacagcaatta 65
>RF01061;mir-548;AANU01170885.1/1-85 9544:Macaca mulatta (rhesus
monkey)
Length = 85
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Minus
Query: 35 taatggcaaaaatagcaattactttcacaccaacctaa 72
|||||||||||| ||||||||||| |||||||||||
Sbjct: 40 taatggcaaaaaccgcaattacttttgcaccaacctaa 3
>RF01061;mir-548;AANU01123316.1/10409-10492 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 37/42 (88%)
Strand = Plus / Plus
Query: 31 aaagtaatggcaaaaatagcaattactttcacaccaacctaa 72
|||||||||||||||| ||||||||||| ||||| |||||
Sbjct: 41 aaagtaatggcaaaaactgcaattacttttgcaccagcctaa 82
>RF01061;mir-548;AANU01283759.1/9595-9678 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 30 aaaagtaatggcaaaaatagcaattacttt 59
||||||||||||||||| |||||||||||
Sbjct: 40 aaaagtaatggcaaaaactgcaattacttt 69
