miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00693;mir-147;ABRQ01122655.1/595-663 9813:Procavia capensis
(cape rock hyrax)
Length = 69
Score = 75.8 bits (38), Expect = 9e-14
Identities = 63/70 (90%), Gaps = 1/70 (1%)
Strand = Plus / Plus
Query: 15 aatctagtggaaacatttccgcacaaactagatcctggacaccagtgtgcggaagtgctt 74
||||||||||||||| ||| ||||||||||||| |||| | ||||||||||||||||||
Sbjct: 1 aatctagtggaaacacttctgcacaaactagattatggata-cagtgtgcggaagtgctt 59
Query: 75 ctgctgcatt 84
||||| ||||
Sbjct: 60 ctgctacatt 69
>RF00693;mir-147;AAYZ01195432.1/14535-14604 9978:Ochotona princeps
(American pika)
Length = 70
Score = 67.9 bits (34), Expect = 2e-11
Identities = 61/70 (87%)
Strand = Plus / Plus
Query: 15 aatctagtggaaacatttccgcacaaactagatcctggacaccagtgtgcggaagtgctt 74
||||||||||||||||||||||||| ||| ||| ||| ||||||||||||||||||
Sbjct: 1 aatctagtggaaacatttccgcacagactcgattatgggtggcagtgtgcggaagtgctt 60
Query: 75 ctgctgcatt 84
||||| ||||
Sbjct: 61 ctgctacatt 70
>RF00693;mir-147;AAKN02027666.1/17442-17511 10141:Cavia porcellus
(domestic guinea pig)
Length = 70
Score = 61.9 bits (31), Expect = 1e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 49 ctggacaccagtgtgcggaagtgcttctgct 79
|||||||||||||||||||||||||||||||
Sbjct: 35 ctggacaccagtgtgcggaagtgcttctgct 65
>RF00693;mir-147;ABQO010681913.1/1802-1733 9315:Macropus eugenii
(tammar wallaby)
Length = 70
Score = 52.0 bits (26), Expect = 1e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 15 aatctagtggaaacatttccgcacaaactagatc 48
||||||||||||||||||| ||||| ||||||||
Sbjct: 1 aatctagtggaaacatttctgcacagactagatc 34
>RF00693;mir-147;AANG01714059.1/489-419 9685:Felis catus (domestic
cat)
Length = 71
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 25 aaacatttccgcacaaactagatcctggacaccagtgtgc 64
||||||||| ||||||||||||| |||| ||||||||||
Sbjct: 11 aaacatttctgcacaaactagattatggataccagtgtgc 50
>RF00693;mir-147;AAFR03018157.1/212021-212090 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 70
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 16 atctagtggaaacatttccgcacaaactaga 46
||||||||||||||| || ||||||||||||
Sbjct: 2 atctagtggaaacatctctgcacaaactaga 32
>RF00693;mir-147;ABQO010540357.1/344-413 9315:Macropus eugenii
(tammar wallaby)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 55 accagtgtgcggaagtgcttctgctgcatt 84
|||||||||| |||||||||||||| ||||
Sbjct: 41 accagtgtgcagaagtgcttctgctacatt 70
>RF00693;mir-147;AAFR03008278.1/59401-59332 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 70
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 55 accagtgtgcggaagtgcttctgctgcatt 84
|||||||||| |||||||||||||| ||||
Sbjct: 41 accagtgtgcagaagtgcttctgctacatt 70
