miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00451;mir-395;ABIM01022224.1/3975-3886 3649:Carica papaya
(papaya)
Length = 90
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 90 tactgaagtgtttgggggaactctgg 115
||||||||||||||||||||||||||
Sbjct: 58 tactgaagtgtttgggggaactctgg 83
>RF00451;mir-395;ABIM01022223.1/1552-1464 3649:Carica papaya
(papaya)
Length = 89
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 90 tactgaagtgtttgggggaactctgg 115
||||||||||||||||||||||||||
Sbjct: 58 tactgaagtgtttgggggaactctgg 83
>RF00451;mir-395;AASG02002767.1/10540-10432 3988:Ricinus communis
(castor bean)
Length = 109
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 88 cctactgaagtgtttgggggaactct 113
||||||||||||||||||||||||||
Sbjct: 75 cctactgaagtgtttgggggaactct 100
>RF00451;mir-395;AARH01003032.1/301169-301270 3694:Populus
trichocarpa
Length = 102
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 88 cctactgaagtgtttgggggaactc 112
|||||||||||||||||||||||||
Sbjct: 68 cctactgaagtgtttgggggaactc 92
>RF00451;mir-395;AARH01006980.1/2290-2177 3694:Populus trichocarpa
Length = 114
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 91 actgaagtgtttgggggaactctgg 115
|||||||||||||||||||||||||
Sbjct: 83 actgaagtgtttgggggaactctgg 107
>RF00451;mir-395;AARH01006982.1/286-388 3694:Populus trichocarpa
Length = 103
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 88 cctactgaagtgtttgggggaactc 112
|||||||||||||||||||||||||
Sbjct: 69 cctactgaagtgtttgggggaactc 93
>RF00451;mir-395;AASG02002767.1/19144-19051 3988:Ricinus communis
(castor bean)
Length = 94
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 88 cctactgaagtgtttgggggaactc 112
|||||||||||||||||||||||||
Sbjct: 60 cctactgaagtgtttgggggaactc 84
>RF00451;mir-395;AM459231.2/3067-3154 29760:Vitis vinifera
Length = 88
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 88 cctactgaagtgtttgggggaactc 112
|||||||||||||||||||||||||
Sbjct: 54 cctactgaagtgtttgggggaactc 78
>RF00451;mir-395;CAAP02005254.1/14718-14811 29760:Vitis vinifera
Length = 94
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 88 cctactgaagtgtttgggggaactc 112
|||||||||||||||||||||||||
Sbjct: 60 cctactgaagtgtttgggggaactc 84
>RF00451;mir-395;CAAP02005177.1/4229-4322 29760:Vitis vinifera
Length = 94
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 88 cctactgaagtgtttgggggaactc 112
|||||||||||||||||||||||||
Sbjct: 60 cctactgaagtgtttgggggaactc 84
>RF00451;mir-395;AM452429.2/43298-43211 29760:Vitis vinifera
Length = 88
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 88 cctactgaagtgtttgggggaactc 112
|||||||||||||||||||||||||
Sbjct: 54 cctactgaagtgtttgggggaactc 78
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 gagttcccctgatcacttcactgggg 36
|||||||||||| |||||||||||||
Sbjct: 11 gagttcccctgaccacttcactgggg 36
>RF00451;mir-395;AM429340.2/1581-1494 29760:Vitis vinifera
Length = 88
Score = 50.1 bits (25), Expect = 7e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 88 cctactgaagtgtttgggggaactc 112
|||||||||||||||||||||||||
Sbjct: 54 cctactgaagtgtttgggggaactc 78
Score = 44.1 bits (22), Expect = 4e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 11 gagttcccctgatcacttcactgggg 36
|||||||||||| |||||||||||||
Sbjct: 11 gagttcccctgaccacttcactgggg 36
>RF00451;mir-395;EU549523.1/332-238 3702:Arabidopsis thaliana (thale
cress)
Length = 95
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 89 ctactgaagtgtttgggggaactc 112
||||||||||||||||||||||||
Sbjct: 62 ctactgaagtgtttgggggaactc 85
>RF00451;mir-395;AC194694.1/94123-94213 4081:Solanum lycopersicum
Length = 91
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 89 ctactgaagtgtttgggggaactc 112
||||||||||||||||||||||||
Sbjct: 58 ctactgaagtgtttgggggaactc 81
>RF00451;mir-395;AC194694.1/82977-83070 4081:Solanum lycopersicum
Length = 94
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 82 tgatgacctactgaagtgtttgggggaactct 113
||||| |||||| |||||||||||||||||||
Sbjct: 54 tgatgccctactaaagtgtttgggggaactct 85
>RF00451;mir-395;ABIM01022224.1/4670-4748 3649:Carica papaya
(papaya)
Length = 79
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 actgaagtgtttgggggaactct 113
|||||||||||||||||||||||
Sbjct: 48 actgaagtgtttgggggaactct 70
>RF00451;mir-395;ABIM01022224.1/4874-4952 3649:Carica papaya
(papaya)
Length = 79
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 actgaagtgtttgggggaactct 113
|||||||||||||||||||||||
Sbjct: 48 actgaagtgtttgggggaactct 70
>RF00451;mir-395;AASG02008621.1/1369-1454 3988:Ricinus communis
(castor bean)
Length = 86
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 91 actgaagtgtttgggggaactct 113
|||||||||||||||||||||||
Sbjct: 55 actgaagtgtttgggggaactct 77
>RF00451;mir-395;AC194694.1/94299-94389 4081:Solanum lycopersicum
Length = 91
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 90 tactgaagtgtttgggggaactc 112
|||||||||||||||||||||||
Sbjct: 59 tactgaagtgtttgggggaactc 81
>RF00451;mir-395;AC145120.1/109208-109115 50514:Solanum demissum
Length = 94
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 82 tgatgacctactgaagtgtttgggggaactc 112
||||| ||| |||||||||||||||||||||
Sbjct: 54 tgatgccctgctgaagtgtttgggggaactc 84
>RF00451;mir-395;AM473306.2/7052-6961 29760:Vitis vinifera
Length = 92
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 2 tgtcctcttgagttcccctgatcacttcactgggg 36
||||| || |||||||||||| |||||||||||||
Sbjct: 2 tgtcccctagagttcccctgaccacttcactgggg 36
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 90 tactgaagtgtttgggggaactc 112
|||||||||||||||||||||||
Sbjct: 60 tactgaagtgtttgggggaactc 82
>RF00451;mir-395;ABXC01004449.1/8869-8999 4558:Sorghum bicolor
(sorghum)
Length = 131
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 93 tgaagtgtttgggggaactctgg 115
|||||||||||||||||||||||
Sbjct: 102 tgaagtgtttgggggaactctgg 124
>RF00451;mir-395;FM164007.1/237-145 3702:Arabidopsis thaliana (thale
cress)
Length = 93
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 91 actgaagtgtttgggggaactc 112
||||||||||||||||||||||
Sbjct: 62 actgaagtgtttgggggaactc 83
>RF00451;mir-395;EU549519.1/323-224 3702:Arabidopsis thaliana (thale
cress)
Length = 100
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 91 actgaagtgtttgggggaactc 112
||||||||||||||||||||||
Sbjct: 69 actgaagtgtttgggggaactc 90
>RF00451;mir-395;AARH01003029.1/111607-111705 3694:Populus
trichocarpa
Length = 99
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 91 actgaagtgtttgggggaactc 112
||||||||||||||||||||||
Sbjct: 68 actgaagtgtttgggggaactc 89
>RF00451;mir-395;AASG02002767.1/24567-24665 3988:Ricinus communis
(castor bean)
Length = 99
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 91 actgaagtgtttgggggaactc 112
||||||||||||||||||||||
Sbjct: 68 actgaagtgtttgggggaactc 89
>RF00451;mir-395;AC194694.1/86216-86306 4081:Solanum lycopersicum
Length = 91
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 92 ctgaagtgtttgggggaactct 113
||||||||||||||||||||||
Sbjct: 61 ctgaagtgtttgggggaactct 82
