miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;EU549227.1/243-121 3702:Arabidopsis thaliana
(thale cress)
Length = 123
Score = 60.0 bits (30), Expect = 9e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 20 ctgtttgctgttggagcatcatcaagattcacaa 53
||||| ||||||||||||||||||||||||||||
Sbjct: 1 ctgttcgctgttggagcatcatcaagattcacaa 34
>RF00452;mir-172;AASG02005670.1/14724-14879 3988:Ricinus communis
(castor bean)
Length = 156
Score = 60.0 bits (30), Expect = 9e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 20 ctgtttgctgttggagcatcatcaagattcacaa 53
|||||||||| |||||||||||||||||||||||
Sbjct: 1 ctgtttgctgatggagcatcatcaagattcacaa 34
>RF00452;mir-172;BABK01012763.1/1927-2053 34305:Lotus japonicus
Length = 127
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 21 tgtttgctgttggagcatcatcaagattcacaa 53
||||||||| |||||||||||||||||||||||
Sbjct: 2 tgtttgctggtggagcatcatcaagattcacaa 34
>RF00452;mir-172;ABIM01001078.1/716-916 3649:Carica papaya
(papaya)
Length = 201
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 20 ctgtttgctgttggagcatcatcaagattcacaa 53
|||||||| | |||||||||||||||||||||||
Sbjct: 1 ctgtttgcggatggagcatcatcaagattcacaa 34
>RF00452;mir-172;AM481129.2/11694-11833 29760:Vitis vinifera
Length = 140
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 20 ctgtttgctgttggagcatcatcaagattcacaa 53
|||||||| | |||||||||||||||||||||||
Sbjct: 1 ctgtttgcggatggagcatcatcaagattcacaa 34
>RF00452;mir-172;AARH01003915.1/155600-155740 3694:Populus
trichocarpa
Length = 141
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 21 tgtttgctgttggagcatcatcaagattcaca 52
||||||| | ||||||||||||||||||||||
Sbjct: 2 tgtttgcgggtggagcatcatcaagattcaca 33
>RF00452;mir-172;EU549232.1/232-344 3702:Arabidopsis thaliana (thale
cress)
Length = 113
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 101 ttgagaatcctgatgatgctgcagtggcaat 131
||||||||| |||||||||||||| ||||||
Sbjct: 80 ttgagaatcttgatgatgctgcagcggcaat 110
>RF00452;mir-172;AARH01004394.1/257332-257189 3694:Populus
trichocarpa
Length = 144
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 tggagcatcatcaagattcacaa 53
|||||||||||||||||||||||
Sbjct: 12 tggagcatcatcaagattcacaa 34
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 100 attgagaatcctgatgatgctgcagtggcaataa 133
|||| ||||| |||||||||||||| ||||||||
Sbjct: 110 attgggaatcttgatgatgctgcagcggcaataa 143
>RF00452;mir-172;CR954190.2/85410-85533 3880:Medicago truncatula
(barrel medic)
Length = 124
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 102 tgagaatcctgatgatgctgcag 124
|||||||||||||||||||||||
Sbjct: 92 tgagaatcctgatgatgctgcag 114
>RF00452;mir-172;ABXC01003290.1/30664-30525 4558:Sorghum bicolor
(sorghum)
Length = 140
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 102 tgagaatcctgatgatgctgca 123
||||||||||||||||||||||
Sbjct: 108 tgagaatcctgatgatgctgca 129
