miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00017;Metazoa_SRP;ABBA01010070.1/108367-108085 9606:Homo sapiens
(human)
Length = 283
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 62 ccagcctgggcgacagaacgagaccctgtctc 93
||||||||||||||||| ||||||||||||||
Sbjct: 250 ccagcctgggcgacagagcgagaccctgtctc 281
>RF00017;Metazoa_SRP;ABSL01060815.1/32590-32309 9606:Homo sapiens
(human)
Length = 282
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 62 ccagcctgggcgacagaacgagaccctgtctcca 95
|||||||||||||||||||||||| | |||||||
Sbjct: 249 ccagcctgggcgacagaacgagactccgtctcca 282
>RF00017;Metazoa_SRP;AADB02012959.1/461482-461201 9606:Homo sapiens
(human)
Length = 282
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 62 ccagcctgggcgacagaacgagaccctgtctcca 95
|||||||||||||||||||||||| | |||||||
Sbjct: 249 ccagcctgggcgacagaacgagactccgtctcca 282
>RF00017;Metazoa_SRP;AC022516.5/6882-6589 9606:Homo sapiens (human)
Length = 294
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Plus
Query: 62 ccagcctgggcgacagaacgagaccctgtctcca 95
|||||||||||||||||||||||| | |||||||
Sbjct: 261 ccagcctgggcgacagaacgagactccgtctcca 294
>RF00017;Metazoa_SRP;ABGA01251873.1/10297-10016 9601:Pongo abelii
(Sumatran orangutan)
Length = 282
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 42 cggagtttcgctcttgttgcccagcctgg 70
|||||||||||||||||||||||| ||||
Sbjct: 277 cggagtttcgctcttgttgcccaggctgg 249
>RF00017;Metazoa_SRP;ABGA01182987.1/957-1220 9601:Pongo abelii
(Sumatran orangutan)
Length = 264
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 42 cggagtttcgctcttgttgcccagcctgg 70
|||||||||||||||||||||||| ||||
Sbjct: 143 cggagtttcgctcttgttgcccaggctgg 115
>RF00017;Metazoa_SRP;ABGA01295557.1/2812-2533 9601:Pongo abelii
(Sumatran orangutan)
Length = 280
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 42 cggagtttcgctcttgttgcccagcctgg 70
|||||||||||||||||||||||| ||||
Sbjct: 275 cggagtttcgctcttgttgcccaggctgg 247
>RF00017;Metazoa_SRP;AADA01198236.1/687-398 9598:Pan troglodytes
(chimpanzee)
Length = 290
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 42 cggagtttcgctcttgttgcccagcctgg 70
|||||||||||||||||||||||| ||||
Sbjct: 285 cggagtttcgctcttgttgcccaggctgg 257
>RF00017;Metazoa_SRP;AACZ02155418.1/32750-32469 9598:Pan troglodytes
(chimpanzee)
Length = 282
Score = 50.1 bits (25), Expect = 7e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 42 cggagtttcgctcttgttgcccagcctgg 70
|||||||||||||||||||||||| ||||
Sbjct: 277 cggagtttcgctcttgttgcccaggctgg 249
>RF00017;Metazoa_SRP;AANU01199639.1/9197-9490 9544:Macaca mulatta
(rhesus monkey)
Length = 294
Score = 50.1 bits (25), Expect = 7e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 61 cccagcctgggcgacagaacgagaccctgtctc 93
|||||||||||| ||| ||||||||||||||||
Sbjct: 260 cccagcctgggcaacataacgagaccctgtctc 292
>RF00017;Metazoa_SRP;ABGA01227117.1/6140-5862 9601:Pongo abelii
(Sumatran orangutan)
Length = 279
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 42 cggagtttcgctcttgttgcccag 65
||||||||||||||||||||||||
Sbjct: 143 cggagtttcgctcttgttgcccag 120
>RF00017;Metazoa_SRP;ABGA01015610.1/12838-13119 9601:Pongo abelii
(Sumatran orangutan)
Length = 282
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 43 ggagtttcgctcttgttgcccagcctgg 70
||||||||||||||||||||||| ||||
Sbjct: 276 ggagtttcgctcttgttgcccaggctgg 249
>RF00017;Metazoa_SRP;ABGA01067256.1/4913-4635 9601:Pongo abelii
(Sumatran orangutan)
Length = 279
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 62 ccagcctgggcgacagaacgagaccctgtctc 93
||||||||||||||||| |||||| |||||||
Sbjct: 246 ccagcctgggcgacagagcgagactctgtctc 277
>RF00017;Metazoa_SRP;ABGA01012901.1/9667-9949 9601:Pongo abelii
(Sumatran orangutan)
Length = 283
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 43 ggagtttcgctcttgttgcccagcctgg 70
||||||||||||||||||||||| ||||
Sbjct: 277 ggagtttcgctcttgttgcccaggctgg 250
>RF00017;Metazoa_SRP;AADA01250173.1/1927-1647 9598:Pan troglodytes
(chimpanzee)
Length = 281
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 62 ccagcctgggcgacagaacgagaccctgtctc 93
||||||||||| |||||||||||| |||||||
Sbjct: 248 ccagcctgggccacagaacgagacactgtctc 279
>RF00017;Metazoa_SRP;AACZ02088004.1/6510-6226 9598:Pan troglodytes
(chimpanzee)
Length = 285
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 62 ccagcctgggcgacagaacgagaccctgtctc 93
|||||||||||||||||| ||||| |||||||
Sbjct: 252 ccagcctgggcgacagaatgagactctgtctc 283
>RF00017;Metazoa_SRP;AC112485.4/61003-60717 9606:Homo sapiens
(human)
Length = 287
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 62 ccagcctgggcgacagaacgagaccctgtctc 93
||||||||||||||||| |||||||||||||
Sbjct: 254 ccagcctgggcgacagagtgagaccctgtctc 285
>RF00017;Metazoa_SRP;ABBA01026783.1/743-1044 9606:Homo sapiens
(human)
Length = 302
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 63 cagcctgggcgacagaacgagaccctgtctccaaag 98
||||||||| |||||| |||||||||||||| ||||
Sbjct: 116 cagcctgggtgacagagcgagaccctgtctcaaaag 151
>RF00017;Metazoa_SRP;CABD01439072.1/559-274 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 286
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 42 cggagtttcgctcttgttgcccag 65
||||||||||||||||||||||||
Sbjct: 283 cggagtttcgctcttgttgcccag 260
>RF00017;Metazoa_SRP;AANU01278149.1/13171-13447 9544:Macaca mulatta
(rhesus monkey)
Length = 277
Score = 48.1 bits (24), Expect = 3e-05
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 62 ccagcctgggcgacagaacgagaccctgtctc 93
||||||||||| ||||| ||||||||||||||
Sbjct: 244 ccagcctgggcaacagagcgagaccctgtctc 275
>RF00017;Metazoa_SRP;AANU01292852.1/19895-20182 9544:Macaca mulatta
(rhesus monkey)
Length = 288
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 43 ggagtttcgctcttgttgcccagcctgg 70
||||||||||||||||||||||| ||||
Sbjct: 284 ggagtttcgctcttgttgcccaggctgg 257
>RF00017;Metazoa_SRP;AC210181.5/143169-143450 9544:Macaca mulatta
(rhesus monkey)
Length = 282
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 43 ggagtttcgctcttgttgcccagcctgg 70
||||||||||||||||||||||| ||||
Sbjct: 276 ggagtttcgctcttgttgcccaggctgg 249
>RF00017;Metazoa_SRP;AANU01286028.1/26918-26635 9544:Macaca mulatta
(rhesus monkey)
Length = 284
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 43 ggagtttcgctcttgttgcccagcctgg 70
||||||||||||||||||||||| ||||
Sbjct: 278 ggagtttcgctcttgttgcccaggctgg 251
>RF00001;5S_rRNA;AADA01147158.1/66-195 9598:Pan troglodytes
(chimpanzee)
Length = 130
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 62 ccagcctgggcgacagaacgagac 85
||||||||||||||||||||||||
Sbjct: 6 ccagcctgggcgacagaacgagac 29
>RF00017;Metazoa_SRP;ABGA01104451.1/3243-3524 9601:Pongo abelii
(Sumatran orangutan)
Length = 282
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 44 gagtttcgctcttgttgcccagcctgg 70
|||||||||||||||||||||| ||||
Sbjct: 275 gagtttcgctcttgttgcccaggctgg 249
>RF00017;Metazoa_SRP;ABGA01397540.1/2954-3235 9601:Pongo abelii
(Sumatran orangutan)
Length = 282
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 44 gagtttcgctcttgttgcccagcctgg 70
|||||||||||||||||||||| ||||
Sbjct: 275 gagtttcgctcttgttgcccaggctgg 249
>RF00017;Metazoa_SRP;AACZ02148834.1/216-549 9598:Pan troglodytes
(chimpanzee)
Length = 334
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 44 gagtttcgctcttgttgcccagcctgg 70
|||||||||||||||||||||| ||||
Sbjct: 138 gagtttcgctcttgttgcccaggctgg 112
>RF00017;Metazoa_SRP;AC187610.3/160817-160538 9598:Pan troglodytes
(chimpanzee)
Length = 280
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 44 gagtttcgctcttgttgcccagcctgg 70
|||||||||||||||||||||| ||||
Sbjct: 273 gagtttcgctcttgttgcccaggctgg 247
>RF00017;Metazoa_SRP;AACZ02132279.1/8599-8317 9598:Pan troglodytes
(chimpanzee)
Length = 283
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 62 ccagcctgggcgacagaacgagaccctgtct 92
||||||||||||||||| |||||| ||||||
Sbjct: 250 ccagcctgggcgacagagcgagactctgtct 280
>RF00017;Metazoa_SRP;ABBA01057579.1/19536-19815 9606:Homo sapiens
(human)
Length = 280
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 44 gagtttcgctcttgttgcccagcctgg 70
|||||||||||||||||||||| ||||
Sbjct: 273 gagtttcgctcttgttgcccaggctgg 247
>RF00017;Metazoa_SRP;AL158801.4/94738-94406 9606:Homo sapiens
(human)
Length = 333
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 44 gagtttcgctcttgttgcccagcctgg 70
|||||||||||||||||||||| ||||
Sbjct: 138 gagtttcgctcttgttgcccaggctgg 112
>RF00017;Metazoa_SRP;AC068675.17/76187-76471 9606:Homo sapiens
(human)
Length = 285
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 44 gagtttcgctcttgttgcccagcctgg 70
|||||||||||||||||||||| ||||
Sbjct: 278 gagtttcgctcttgttgcccaggctgg 252
>RF00017;Metazoa_SRP;CABD01180400.1/5673-5392 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 282
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 43 ggagtttcgctcttgttgcccag 65
|||||||||||||||||||||||
Sbjct: 276 ggagtttcgctcttgttgcccag 254
>RF00017;Metazoa_SRP;AANU01123929.1/40195-39914 9544:Macaca mulatta
(rhesus monkey)
Length = 282
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 44 gagtttcgctcttgttgcccagcctgg 70
|||||||||||||||||||||| ||||
Sbjct: 275 gagtttcgctcttgttgcccaggctgg 249
>RF00017;Metazoa_SRP;AANU01200547.1/793-1124 9544:Macaca mulatta
(rhesus monkey)
Length = 332
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 43 ggagtttcgctcttgttgcccag 65
|||||||||||||||||||||||
Sbjct: 139 ggagtttcgctcttgttgcccag 117
>RF00017;Metazoa_SRP;ABGA01270457.1/1567-1860 9601:Pongo abelii
(Sumatran orangutan)
Length = 294
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 62 ccagcctgggcgacagaacgagaccctgtctcca 95
||||||||||||||||||| |||| | |||||||
Sbjct: 261 ccagcctgggcgacagaactagactccgtctcca 294
>RF00017;Metazoa_SRP;ABGA01280672.1/9010-8728 9601:Pongo abelii
(Sumatran orangutan)
Length = 283
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 45 agtttcgctcttgttgcccagcctgg 70
||||||||||||||||||||| ||||
Sbjct: 275 agtttcgctcttgttgcccaggctgg 250
>RF00017;Metazoa_SRP;ABGA01291646.1/18820-19110 9601:Pongo abelii
(Sumatran orangutan)
Length = 291
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 45 agtttcgctcttgttgcccagcctgg 70
||||||||||||||||||||| ||||
Sbjct: 283 agtttcgctcttgttgcccaggctgg 258
>RF00017;Metazoa_SRP;AACZ02006283.1/44997-45278 9598:Pan troglodytes
(chimpanzee)
Length = 282
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 45 agtttcgctcttgttgcccagcctgg 70
||||||||||||||||||||| ||||
Sbjct: 274 agtttcgctcttgttgcccaggctgg 249
>RF00017;Metazoa_SRP;AADB02288330.1/334-619 9606:Homo sapiens
(human)
Length = 286
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 44 gagtttcgctcttgttgcccag 65
||||||||||||||||||||||
Sbjct: 145 gagtttcgctcttgttgcccag 124
>RF00017;Metazoa_SRP;AADD01142743.1/2651-2932 9606:Homo sapiens
(human)
Length = 282
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 41 gcggagtttcgctcttgttgcccagcctgg 70
|||||||||| |||||||||||||| ||||
Sbjct: 278 gcggagtttcactcttgttgcccaggctgg 249
>RF00017;Metazoa_SRP;CABD01048418.1/5276-4998 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 279
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 44 gagtttcgctcttgttgcccag 65
||||||||||||||||||||||
Sbjct: 141 gagtttcgctcttgttgcccag 120
>RF00017;Metazoa_SRP;AC211718.3/4878-5179 9544:Macaca mulatta
(rhesus monkey)
Length = 302
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 64 agcctgggcgacagaacgagaccctgtctc 93
|||||||| |||||| ||||||||||||||
Sbjct: 119 agcctgggtgacagagcgagaccctgtctc 148
>RF00017;Metazoa_SRP;AANU01049257.1/544-228 9544:Macaca mulatta
(rhesus monkey)
Length = 317
Score = 44.1 bits (22), Expect = 5e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 66 cctgggcgacagaacgagaccctgtctccaaaggaaaa 103
|||||| |||||| |||||||||||||| |||| ||||
Sbjct: 119 cctgggtgacagagcgagaccctgtctcaaaagtaaaa 156
