miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00017;Metazoa_SRP;AC011443.6/127389-127670 9606:Homo sapiens
(human)
Length = 282
Score = 60.0 bits (30), Expect = 5e-09
Identities = 54/62 (87%)
Strand = Plus / Plus
Query: 33 ctacttggtagactgaggtggaaaaatcacctgaacccaggaggttgaggctgcagtgag 92
|||||||| || ||||||||| | |||||| ||| ||||||||||||||| | |||||||
Sbjct: 34 ctacttgggaggctgaggtgggagaatcacttgagcccaggaggttgaggttacagtgag 93
Query: 93 ct 94
||
Sbjct: 94 ct 95
>RF00017;Metazoa_SRP;AADB02020082.1/476054-476335 9606:Homo
sapiens (human)
Length = 282
Score = 60.0 bits (30), Expect = 5e-09
Identities = 45/50 (90%)
Strand = Plus / Plus
Query: 45 ctgaggtggaaaaatcacctgaacccaggaggttgaggctgcagtgagct 94
||||||||| | ||||| |||||||||||| ||||||||||||||||||
Sbjct: 46 ctgaggtgggaggatcacttgaacccaggagtttgaggctgcagtgagct 95
>RF00017;Metazoa_SRP;AANU01223162.1/25365-25667 9544:Macaca mulatta
(rhesus monkey)
Length = 303
Score = 60.0 bits (30), Expect = 5e-09
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 57 aatcacctgaacccaggaggttgaggctgcagtgagct 94
|||||| |||||||||||||| ||||||||||||||||
Sbjct: 192 aatcacttgaacccaggaggtcgaggctgcagtgagct 229
>RF00017;Metazoa_SRP;ABRT010507985.1/398-677 9478:Tarsius syrichta
(Philippine tarsier)
Length = 280
Score = 54.0 bits (27), Expect = 3e-07
Identities = 42/47 (89%)
Strand = Plus / Plus
Query: 47 gaggtggaaaaatcacctgaacccaggaggttgaggctgcagtgagc 93
||||||||| ||| ||||| |||||||||| |||||||||||||||
Sbjct: 180 gaggtggaaggatcgcctgagcccaggaggtcgaggctgcagtgagc 226
>RF00017;Metazoa_SRP;ABGA01148693.1/2108-1820 9601:Pongo abelii
(Sumatran orangutan)
Length = 289
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 68 cccaggaggttgaggctgcagtgagct 94
|||||||||||||||||||||||||||
Sbjct: 69 cccaggaggttgaggctgcagtgagct 95
>RF00017;Metazoa_SRP;AC186769.1/112170-112452 9601:Pongo abelii
(Sumatran orangutan)
Length = 283
Score = 52.0 bits (26), Expect = 1e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 55 aaaatcacctgaacccaggaggttgaggctgcagtgag 92
|||||||| ||||||||||||| ||||||||||||||
Sbjct: 191 aaaatcacttgaacccaggaggcggaggctgcagtgag 228
>RF00017;Metazoa_SRP;AACZ02132279.1/8599-8317 9598:Pan troglodytes
(chimpanzee)
Length = 283
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 65 gaacccaggaggttgaggctgcagtgagc 93
||||||||||||| |||||||||||||||
Sbjct: 201 gaacccaggaggtggaggctgcagtgagc 229
>RF00017;Metazoa_SRP;AADB02020364.1/19745-19464 9606:Homo sapiens
(human)
Length = 282
Score = 50.1 bits (25), Expect = 5e-06
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 33 ctacttggtagactgaggtggaaaaatcacctgaacccaggaggttgaggctgcagtgag 92
|||||||| || |||||| ||||||||| ||||||| ||||| ||||||||||||||
Sbjct: 168 ctacttgggaggctgaggcacaaaaatcacttgaacccgggaggcggaggctgcagtgag 227
Query: 93 c 93
|
Sbjct: 228 c 228
>RF00017;Metazoa_SRP;ABSL01053133.1/51364-51063 9606:Homo sapiens
(human)
Length = 302
Score = 50.1 bits (25), Expect = 5e-06
Identities = 52/61 (85%)
Strand = Plus / Plus
Query: 33 ctacttggtagactgaggtggaaaaatcacctgaacccaggaggttgaggctgcagtgag 92
|||||||| || |||||| ||| |||||| ||||||||||||| |||| |||||||||
Sbjct: 168 ctacttggaaggctgaggcagaagaatcacttgaacccaggaggcagaggttgcagtgag 227
Query: 93 c 93
|
Sbjct: 228 c 228
>RF00017;Metazoa_SRP;CABD01021803.1/1465-1747 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 283
Score = 50.1 bits (25), Expect = 5e-06
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 57 aatcacctgaacccaggaggttgaggctgcagtgagc 93
|||||||||||||||||||| |||| ||||||||||
Sbjct: 193 aatcacctgaacccaggaggcagaggttgcagtgagc 229
>RF00017;Metazoa_SRP;ABGA01230818.1/8679-8961 9601:Pongo abelii
(Sumatran orangutan)
Length = 283
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 57 aatcacctgaacccaggaggttgaggctgcagtgag 92
|||||||||||||||||||| |||| |||||||||
Sbjct: 193 aatcacctgaacccaggaggcggaggttgcagtgag 228
>RF00017;Metazoa_SRP;ABSL01073942.1/41714-41985 9606:Homo sapiens
(human)
Length = 272
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 58 atcacctgaacccaggaggttgaggctgcagtgagc 93
||||||||| || |||||||||||||| ||||||||
Sbjct: 59 atcacctgagcctaggaggttgaggctccagtgagc 94
>RF00017;Metazoa_SRP;ABGA01171232.1/2364-2095 9601:Pongo abelii
(Sumatran orangutan)
Length = 270
Score = 46.1 bits (23), Expect = 8e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 72 ggaggttgaggctgcagtgagct 94
|||||||||||||||||||||||
Sbjct: 73 ggaggttgaggctgcagtgagct 95
>RF00017;Metazoa_SRP;AADA01237794.1/7047-7329 9598:Pan troglodytes
(chimpanzee)
Length = 283
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 64 tgaacccaggaggttgaggctgcagtgagct 94
||||| |||||||| ||||||||||||||||
Sbjct: 195 tgaactcaggaggtagaggctgcagtgagct 225
>RF00017;Metazoa_SRP;AACZ02040322.1/19480-19196 9598:Pan troglodytes
(chimpanzee)
Length = 285
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 64 tgaacccaggaggttgaggctgcagtgagct 94
||||||||||||| ||||||||||||||||
Sbjct: 202 tgaacccaggaggcagaggctgcagtgagct 232
>RF00017;Metazoa_SRP;AC092068.2/27193-27483 9606:Homo sapiens
(human)
Length = 291
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 64 tgaacccaggaggttgaggctgcagtgagct 94
|||||||||||||| |||| |||||||||||
Sbjct: 65 tgaacccaggaggtggaggttgcagtgagct 95
>RF00017;Metazoa_SRP;ABBA01051233.1/36518-36802 9606:Homo sapiens
(human)
Length = 285
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 64 tgaacccaggaggttgaggctgcagtgagct 94
||||||||||||| ||||||||||||||||
Sbjct: 202 tgaacccaggaggcagaggctgcagtgagct 232
>RF00017;Metazoa_SRP;AC079176.15/137643-137361 9606:Homo sapiens
(human)
Length = 283
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 64 tgaacccaggaggttgaggctgcagtgagct 94
|||||||||||||| |||| |||||||||||
Sbjct: 200 tgaacccaggaggtggaggttgcagtgagct 230
>RF00017;Metazoa_SRP;AADB02001004.1/28119-27839 9606:Homo sapiens
(human)
Length = 281
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 64 tgaacccaggaggttgaggctgcagtgagct 94
|||||||||||||| |||| |||||||||||
Sbjct: 198 tgaacccaggaggtggaggttgcagtgagct 228
>RF00017;Metazoa_SRP;AADB02011926.1/856219-855937 9606:Homo sapiens
(human)
Length = 283
Score = 46.1 bits (23), Expect = 8e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 55 aaaatcacctgaacccaggaggttgaggctgcagtgagc 93
|||||||| |||||||||||| |||||||||||||||
Sbjct: 191 aaaatcacttgaacccaggagacagaggctgcagtgagc 229
>RF00017;Metazoa_SRP;AADC01136909.1/67445-67729 9606:Homo sapiens
(human)
Length = 285
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 64 tgaacccaggaggttgaggctgcagtgagct 94
||||||||||||| ||||||||||||||||
Sbjct: 202 tgaacccaggaggcagaggctgcagtgagct 232
>RF00017;Metazoa_SRP;AADB02035138.1/25911-26193 9606:Homo sapiens
(human)
Length = 283
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 64 tgaacccaggaggttgaggctgcagtgagct 94
|||||||||||||| |||| |||||||||||
Sbjct: 200 tgaacccaggaggtggaggttgcagtgagct 230
>RF00017;Metazoa_SRP;AADD01037841.1/13600-13316 9606:Homo sapiens
(human)
Length = 285
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 68 cccaggaggttgaggctgcagtgagct 94
|||||||| ||||||||||||||||||
Sbjct: 206 cccaggagtttgaggctgcagtgagct 232
>RF00017;Metazoa_SRP;AC006160.9/104934-105234 9606:Homo sapiens
(human)
Length = 301
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 64 tgaacccaggaggttgaggctgcagtgagct 94
||||||||||||| ||||||||||||||||
Sbjct: 197 tgaacccaggaggcagaggctgcagtgagct 227
>RF00017;Metazoa_SRP;AADD01037694.1/6621-6905 9606:Homo sapiens
(human)
Length = 285
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 64 tgaacccaggaggttgaggctgcagtgagct 94
||||||||||||| ||||||||||||||||
Sbjct: 202 tgaacccaggaggcagaggctgcagtgagct 232
>RF00017;Metazoa_SRP;AANU01172237.1/32329-32047 9544:Macaca mulatta
(rhesus monkey)
Length = 283
Score = 46.1 bits (23), Expect = 8e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 64 tgaacccaggaggttgaggctgcagtgagct 94
|||||||||||||| |||| |||||||||||
Sbjct: 200 tgaacccaggaggtggaggttgcagtgagct 230
>RF00017;Metazoa_SRP;ABRT010789052.1/1553-1853 9478:Tarsius syrichta
(Philippine tarsier)
Length = 301
Score = 44.1 bits (22), Expect = 3e-04
Identities = 40/46 (86%)
Strand = Plus / Plus
Query: 45 ctgaggtggaaaaatcacctgaacccaggaggttgaggctgcagtg 90
|||||| |||| ||||||||| ||||| |||| ||||||||||||
Sbjct: 181 ctgaggcggaaggatcacctgagcccagcaggtcgaggctgcagtg 226
>RF00017;Metazoa_SRP;ABGA01089872.1/3114-3415 9601:Pongo abelii
(Sumatran orangutan)
Length = 302
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 64 tgaacccaggaggttgaggctgcagtgagc 93
||||||||||||| |||||||||||||||
Sbjct: 200 tgaacccaggaggcagaggctgcagtgagc 229
>RF00017;Metazoa_SRP;ABGA01172272.1/9412-9694 9601:Pongo abelii
(Sumatran orangutan)
Length = 283
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 64 tgaacccaggaggttgaggctgcagtgagc 93
|||||||||||||| |||| ||||||||||
Sbjct: 200 tgaacccaggaggtggaggttgcagtgagc 229
>RF00017;Metazoa_SRP;ABGA01099690.1/20448-20727 9601:Pongo abelii
(Sumatran orangutan)
Length = 280
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 64 tgaacccaggaggttgaggctgcagtgagc 93
|||||||||||||| |||||| ||||||||
Sbjct: 197 tgaacccaggaggtagaggctacagtgagc 226
>RF00017;Metazoa_SRP;ABGA01146174.1/1083-800 9601:Pongo abelii
(Sumatran orangutan)
Length = 284
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 57 aatcacctgaacccaggaggttgaggctgcagtgagct 94
|||||| ||||||||||||| |||| |||||||||||
Sbjct: 194 aatcacttgaacccaggaggcagaggttgcagtgagct 231
>RF00017;Metazoa_SRP;AACZ02112509.1/54888-54606 9598:Pan troglodytes
(chimpanzee)
Length = 283
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 64 tgaacccaggaggttgaggctgcagtgagc 93
||||||||||||| |||||||||||||||
Sbjct: 200 tgaacccaggaggcagaggctgcagtgagc 229
>RF00017;Metazoa_SRP;AADA01037501.1/11371-11084 9598:Pan troglodytes
(chimpanzee)
Length = 288
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 64 tgaacccaggaggttgaggctgcagtgagc 93
|||||||||||||| |||| ||||||||||
Sbjct: 199 tgaacccaggaggtggaggttgcagtgagc 228
>RF00017;Metazoa_SRP;AADA01128625.1/41280-41564 9598:Pan troglodytes
(chimpanzee)
Length = 285
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 57 aatcacctgaacccaggaggttgaggctgcagtgagct 94
|||||| ||||||||| |||| |||| |||||||||||
Sbjct: 194 aatcacttgaacccagcaggtggaggttgcagtgagct 231
>RF00017;Metazoa_SRP;AADA01310983.1/9423-9705 9598:Pan troglodytes
(chimpanzee)
Length = 283
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 57 aatcacctgaacccaggaggttgaggctgcagtgagct 94
|||||| ||| ||| |||||| ||||||||||||||||
Sbjct: 58 aatcacttgagcccgggaggtggaggctgcagtgagct 95
>RF00017;Metazoa_SRP;AACZ02114187.1/25615-25895 9598:Pan troglodytes
(chimpanzee)
Length = 281
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 65 gaacccaggaggttgaggctgcagtgagct 94
|||||||||||| ||||||||||||||||
Sbjct: 201 gaacccaggaggcagaggctgcagtgagct 230
>RF00017;Metazoa_SRP;AACZ02154509.1/5623-5904 9598:Pan troglodytes
(chimpanzee)
Length = 282
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 64 tgaacccaggaggttgaggctgcagtgagc 93
|||||||||||||| |||| ||||||||||
Sbjct: 199 tgaacccaggaggtggaggttgcagtgagc 228
>RF00017;Metazoa_SRP;ABSL01069015.1/4520-4801 9606:Homo sapiens
(human)
Length = 282
Score = 44.1 bits (22), Expect = 3e-04
Identities = 43/50 (86%)
Strand = Plus / Plus
Query: 45 ctgaggtggaaaaatcacctgaacccaggaggttgaggctgcagtgagct 94
||||||||| | ||||| ||||||| |||| |||| |||||||||||||
Sbjct: 46 ctgaggtgggaggatcacttgaaccccggagtttgaagctgcagtgagct 95
>RF00017;Metazoa_SRP;ABBA01034440.1/105281-104999 9606:Homo sapiens
(human)
Length = 283
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 64 tgaacccaggaggttgaggctgcagtgagc 93
||||||||||||| |||||||||||||||
Sbjct: 200 tgaacccaggaggcagaggctgcagtgagc 229
>RF00017;Metazoa_SRP;ABSL01076439.1/4172-3889 9606:Homo sapiens
(human)
Length = 284
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 57 aatcacctgaacccaggaggttgaggctgcagtgagct 94
|||||| ||||||||||||| |||| |||||||||||
Sbjct: 193 aatcacttgaacccaggaggcagaggttgcagtgagct 230
>RF00017;Metazoa_SRP;AADC01130061.1/7118-6836 9606:Homo sapiens
(human)
Length = 283
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 57 aatcacctgaacccaggaggttgaggctgcagtgagct 94
|||||| ||||||||||||| |||| |||||||||||
Sbjct: 193 aatcacttgaacccaggaggcagaggttgcagtgagct 230
>RF00017;Metazoa_SRP;AADC01161341.1/1991-2267 9606:Homo sapiens
(human)
Length = 277
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 64 tgaacccaggaggttgaggctgcagtgagc 93
||||||||||||| |||||||||||||||
Sbjct: 65 tgaacccaggaggcagaggctgcagtgagc 94
>RF00017;Metazoa_SRP;AADD01142743.1/2651-2932 9606:Homo sapiens
(human)
Length = 282
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 64 tgaacccaggaggttgaggctgcagtgagc 93
|||||||||||||| |||| ||||||||||
Sbjct: 199 tgaacccaggaggtggaggttgcagtgagc 228
>RF00017;Metazoa_SRP;AANU01175737.1/2327-2596 9544:Macaca mulatta
(rhesus monkey)
Length = 270
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 57 aatcacctgaacccaggaggttgaggctgcagtgagct 94
|||||| ||||||||||||| |||| |||||||||||
Sbjct: 180 aatcacttgaacccaggaggcagaggttgcagtgagct 217
>RF00017;Metazoa_SRP;AANU01236820.1/8882-8535 9544:Macaca mulatta
(rhesus monkey)
Length = 348
Score = 44.1 bits (22), Expect = 3e-04
Identities = 34/38 (89%)
Strand = Plus / Plus
Query: 57 aatcacctgaacccaggaggttgaggctgcagtgagct 94
|||||| ||||| |||||||| |||| |||||||||||
Sbjct: 58 aatcacttgaactcaggaggtggaggttgcagtgagct 95
>RF00017;Metazoa_SRP;AANU01234775.1/5697-5978 9544:Macaca mulatta
(rhesus monkey)
Length = 282
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 65 gaacccaggaggttgaggctgcagtgagct 94
||||||||||||| |||| |||||||||||
Sbjct: 200 gaacccaggaggtagaggttgcagtgagct 229
>RF00017;Metazoa_SRP;AANU01255475.1/22006-22292 9544:Macaca mulatta
(rhesus monkey)
Length = 287
Score = 44.1 bits (22), Expect = 3e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 64 tgaacccaggaggttgaggctgcagtgagc 93
|||||||||||||| |||| ||||||||||
Sbjct: 200 tgaacccaggaggtggaggttgcagtgagc 229
>RF00876;mir-684;ABBA01038432.1/33826-33743 9606:Homo sapiens
(human)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 68 cccaggaggttgaggctgcagtgagc 93
||||| ||||||||||||||||||||
Sbjct: 84 cccagaaggttgaggctgcagtgagc 59
