miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01061;mir-548;AANU01124258.1/9508-9425 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 60.0 bits (30), Expect = 5e-09
Identities = 59/66 (89%), Gaps = 2/66 (3%)
Strand = Plus / Minus
Query: 20 agaaattgtggtatttgccattacctttcataggaaa-agccacagttacttttgcacca 78
|||||||||||| ||||||||||| ||| ||||| || | ||||| ||||||||||||||
Sbjct: 67 agaaattgtggtttttgccattactttt-ataggcaagaaccacaattacttttgcacca 9
Query: 79 acctaa 84
||||||
Sbjct: 8 acctaa 3
>RF01061;mir-548;CABD01075799.2/302-219 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 54.0 bits (27), Expect = 3e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 54 aaaagccacagttacttttgcaccaacctaa 84
||||||| |||||||||||||||||||||||
Sbjct: 33 aaaagccgcagttacttttgcaccaacctaa 3
>RF01061;mir-548;AANU01255888.1/15264-15181 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 54.0 bits (27), Expect = 3e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 54 aaaagccacagttacttttgcaccaac 80
|||||||||||||||||||||||||||
Sbjct: 52 aaaagccacagttacttttgcaccaac 78
>RF01061;mir-548;AANU01123316.1/10409-10492 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 54.0 bits (27), Expect = 3e-07
Identities = 45/51 (88%)
Strand = Plus / Minus
Query: 33 tttgccattacctttcataggaaaagccacagttacttttgcaccaaccta 83
||||||||||| || || |||||| |||||||||||||||||||| ||||
Sbjct: 54 tttgccattactttcaatgggaaaaaccacagttacttttgcaccagccta 4
>RF01061;mir-548;AC191392.1/146896-146813 9598:Pan troglodytes
(chimpanzee)
Length = 84
Score = 52.0 bits (26), Expect = 1e-06
Identities = 69/82 (84%), Gaps = 1/82 (1%)
Strand = Plus / Minus
Query: 2 tattaggttggtgcgcacagaaattgtggtatttgccattacctttcataggaaaagcca 61
|||||||||||||| || || |||||||| ||| |||||| ||| || | |||| |||
Sbjct: 84 tattaggttggtgc-caaagtaattgtgggtcttgtcattacttttaatggcaaaaccca 26
Query: 62 cagttacttttgcaccaaccta 83
|||||||||| |||||||||||
Sbjct: 25 cagttactttggcaccaaccta 4
>RF01061;mir-548;AACZ02184973.1/13727-13644 9598:Pan troglodytes
(chimpanzee)
Length = 84
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 54 aaaagccacagttacttttgcaccaacct 82
|||| ||||||||||||||||||||||||
Sbjct: 33 aaaaaccacagttacttttgcaccaacct 5
>RF01061;mir-548;AC099678.2/65387-65470 9606:Homo sapiens (human)
Length = 84
Score = 50.1 bits (25), Expect = 5e-06
Identities = 52/61 (85%)
Strand = Plus / Minus
Query: 24 attgtggtatttgccattacctttcataggaaaagccacagttacttttgcaccaaccta 83
|||||||| ||||||||||| || || | |||| ||||| |||||| ||||||||||||
Sbjct: 63 attgtggtttttgccattactttaaatggcaaaaaccacaattacttgtgcaccaaccta 4
Query: 84 a 84
|
Sbjct: 3 a 3
>RF01061;mir-548;ABGA01354861.1/8138-8055 9601:Pongo abelii
(Sumatran orangutan)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 45 tttcataggaaaagccacagttacttttgcaccaacctaa 84
|||||| | |||| ||||| ||||||||||||||||||||
Sbjct: 42 tttcatggcaaaaaccacaattacttttgcaccaacctaa 3
>RF01061;mir-548;AL008721.1/97595-97678 9606:Homo sapiens (human)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 33 tttgccattacctttcataggaaaagccacagttacttttgcaccaacctaa 84
||||||||||| ||| || | |||||| || ||||||||||||||||||||
Sbjct: 54 tttgccattacttttaatggcaaaagctgcaattacttttgcaccaacctaa 3
>RF01061;mir-548;CABD01355261.2/2635-2552 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 54/64 (84%)
Strand = Plus / Minus
Query: 23 aattgtggtatttgccattacctttcataggaaaagccacagttacttttgcaccaacct 82
||||||||| ||||||||||| || || | |||| || || |||||||||| |||||||
Sbjct: 64 aattgtggtttttgccattactttcaatggcaaaaaccgcaattacttttgctccaacct 5
Query: 83 aaca 86
||||
Sbjct: 4 aaca 1
>RF01061;mir-548;CABD01001244.1/12488-12571 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 45/52 (86%)
Strand = Plus / Minus
Query: 33 tttgccattacctttcataggaaaagccacagttacttttgcaccaacctaa 84
||||||||||| ||| || | |||| || || ||||||||||||||||||||
Sbjct: 54 tttgccattacttttaatggcaaaatccgcaattacttttgcaccaacctaa 3
>RF01061;mir-548;AACZ02147953.1/7033-7116 9598:Pan troglodytes
(chimpanzee)
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 54 aaaagccacagttacttttgcaccaacctaa 84
|||| ||||| ||||||||||||||||||||
Sbjct: 33 aaaaaccacaattacttttgcaccaacctaa 3
>RF01061;mir-548;AC068058.12/13722-13805 9606:Homo sapiens (human)
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 54 aaaagccacagttacttttgcaccaacctaa 84
|||| ||||| ||||||||||||||||||||
Sbjct: 52 aaaacccacaattacttttgcaccaacctaa 82
>RF01061;mir-548;AC011709.11/112131-112214 9606:Homo sapiens
(human)
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 54 aaaagccacagttacttttgcaccaacctaa 84
|||| |||||||||| |||||||||||||||
Sbjct: 52 aaaaaccacagttacatttgcaccaacctaa 82
>RF01061;mir-548;AADC01117423.1/979850-979767 9606:Homo sapiens
(human)
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 50/59 (84%)
Strand = Plus / Minus
Query: 23 aattgtggtatttgccattacctttcataggaaaagccacagttacttttgcaccaacc 81
||||||||| ||||| ||||| ||| || | |||| || || |||||||||||||||||
Sbjct: 64 aattgtggtttttgcaattacttttaatggcaaaaaccgcaattacttttgcaccaacc 6
>RF01061;mir-548;AADB02011926.1/1109567-1109484 9606:Homo sapiens
(human)
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 cagttacttttgcaccaacctaa 84
|||||||||||||||||||||||
Sbjct: 60 cagttacttttgcaccaacctaa 82
>RF01061;mir-548;AC104803.4/65993-66076 9606:Homo sapiens (human)
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 cagttacttttgcaccaacctaa 84
|||||||||||||||||||||||
Sbjct: 60 cagttacttttgcaccaacctaa 82
>RF01061;mir-548;AADC01054028.1/147-64 9606:Homo sapiens (human)
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 60 cacagttacttttgcaccaacctaaca 86
|||| ||||||||||||||||||||||
Sbjct: 27 cacaattacttttgcaccaacctaaca 1
>RF01061;mir-548;AADD01165731.1/6332-6415 9606:Homo sapiens
(human)
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 69/83 (83%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 2 tattaggttggtgcgcacagaaattgtggtatttgccattacctttcataggaaaagcca 61
|||||||||||||| | || ||||||||| | ||||||| | ||| || | ||||||||
Sbjct: 1 tattaggttggtgcaaa-agtaattgtggtttctgccattgcttttaatggcaaaagcca 59
Query: 62 cagttacttttgcaccaacctaa 84
|| ||||||||||| |||||||
Sbjct: 60 caattacttttgcattaacctaa 82
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 59 ccacagttacttttgcaccaacctaa 84
||||| ||||||||||||||||||||
Sbjct: 28 ccacaattacttttgcaccaacctaa 3
>RF01061;mir-548;ABSL01062835.1/19063-18980 9606:Homo sapiens
(human)
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 54 aaaagccacagttacttttgcaccaacctaa 84
|||| ||||| ||||||||||||||||||||
Sbjct: 33 aaaaaccacaattacttttgcaccaacctaa 3
>RF01061;mir-548;AC004963.2/156846-156763 9606:Homo sapiens
(human)
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 54 aaaagccacagttacttttgcaccaacctaa 84
|||||||||| ||||| ||||||||||||||
Sbjct: 33 aaaagccacaattactgttgcaccaacctaa 3
>RF01061;mir-548;AADC01102129.1/13137-13054 9606:Homo sapiens
(human)
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 54 aaaagccacagttacttttgcaccaacctaa 84
|||||||||| |||||||| |||||||||||
Sbjct: 33 aaaagccacaattactttttcaccaacctaa 3
>RF01061;mir-548;CABD01195132.2/4219-4302 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 54 aaaagccacagttacttttgcaccaacctaa 84
|||| ||||||||||||||||| ||||||||
Sbjct: 33 aaaacccacagttacttttgcagcaacctaa 3
>RF01061;mir-548;CABD01524054.2/315-398 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 69/83 (83%), Gaps = 1/83 (1%)
Strand = Plus / Minus
Query: 2 tattaggttggtgcgcacagaaattgtggtatttgccattacctttcataggaaaagcca 61
|||||||||||||| | |||||||| ||| ||||||| || ||| |||| |||| ||
Sbjct: 84 tattaggttggtgcaaa-agaaattgcggtttttgccactagcttcaatagcaaaaaccg 26
Query: 62 cagttacttttgcaccaacctaa 84
|| ||||||||||| ||||||||
Sbjct: 25 caattacttttgcaacaacctaa 3
>RF01061;mir-548;CABD01155376.1/1695-1778 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 cagttacttttgcaccaacctaa 84
|||||||||||||||||||||||
Sbjct: 60 cagttacttttgcaccaacctaa 82
>RF01061;mir-548;CABD01536052.2/836-753 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 46.1 bits (23), Expect = 7e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 54 aaaagccacagttacttttgcaccaacctaa 84
|||||||||||| ||||||| ||||||||||
Sbjct: 52 aaaagccacagtgacttttgtaccaacctaa 82
>RF01061;mir-548;AACZ02112099.1/25061-25144 9598:Pan troglodytes
(chimpanzee)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 59 ccacagttacttttgcaccaacctaa 84
||||| ||||||||||||||||||||
Sbjct: 28 ccacaattacttttgcaccaacctaa 3
>RF01061;mir-548;AADB02037333.1/77827-77910 9606:Homo sapiens
(human)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 51/58 (87%), Gaps = 2/58 (3%)
Strand = Plus / Plus
Query: 24 attgtggtatttgccattacctttcatagg-aaaagccacagttacttttgcaccaac 80
|||||||| ||||||||||| ||||| || |||| ||||||| ||||||||||||||
Sbjct: 22 attgtggtttttgccattac-tttcagtggcaaaaaccacagtaacttttgcaccaac 78
>RF01061;mir-548;AC121493.1/11246-11329 9606:Homo sapiens (human)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 ccacagttacttttgcaccaacctaa 84
||||| ||||||||||||||||||||
Sbjct: 57 ccacaattacttttgcaccaacctaa 82
>RF01061;mir-548;CABD01386540.1/401-318 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 65 ttacttttgcaccaacctaaca 86
||||||||||||||||||||||
Sbjct: 63 ttacttttgcaccaacctaaca 84
>RF01061;mir-548;CABD01009254.1/6580-6663 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 59 ccacagttacttttgcaccaacctaa 84
||||| ||||||||||||||||||||
Sbjct: 28 ccacaattacttttgcaccaacctaa 3
>RF01061;mir-548;CABD01149968.2/8500-8417 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 62 cagttacttttgcaccaaccta 83
||||||||||||||||||||||
Sbjct: 60 cagttacttttgcaccaaccta 81
>RF01061;mir-548;AANU01290519.1/8633-8716 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 59 ccacagttacttttgcaccaacctaa 84
||||| ||||||||||||||||||||
Sbjct: 28 ccacaattacttttgcaccaacctaa 3
>RF01061;mir-548;AANU01261834.1/7167-7084 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 59 ccacagttacttttgcaccaacctaa 84
||||| ||||||||||||||||||||
Sbjct: 28 ccacaattacttttgcaccaacctaa 3
>RF01061;mir-548;AANU01230369.1/6404-6321 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 52/62 (83%)
Strand = Plus / Plus
Query: 23 aattgtggtatttgccattacctttcataggaaaagccacagttacttttgcaccaacct 82
||||||||| |||| |||||| ||| || | ||| || ||||| |||||||||||||||
Sbjct: 21 aattgtggtctttgtcattacttttaatggcaaagaccccagttccttttgcaccaacct 80
Query: 83 aa 84
||
Sbjct: 81 aa 82
>RF01061;mir-548;AANU01248525.1/14264-14347 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 52/62 (83%)
Strand = Plus / Minus
Query: 23 aattgtggtatttgccattacctttcataggaaaagccacagttacttttgcaccaacct 82
||||| ||| ||||||||| | ||| || | |||| ||| | ||||||||||||||||||
Sbjct: 64 aattgcggtttttgccattgcttttgatggcaaaaaccataattacttttgcaccaacct 5
Query: 83 aa 84
||
Sbjct: 4 aa 3
>RF00015;U4;AAPY01611593.1/548-750 37347:Tupaia belangeri (northern
tree shrew)
Length = 203
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 59 ccacagttacttttgcaccaacctaa 84
||||| ||||||||||||||||||||
Sbjct: 79 ccacaattacttttgcaccaacctaa 104
