miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01061;mir-548;AACZ02012902.1/7610-7693 9598:Pan troglodytes
(chimpanzee)
Length = 84
Score = 52.0 bits (26), Expect = 8e-07
Identities = 41/45 (91%), Gaps = 2/45 (4%)
Strand = Plus / Plus
Query: 20 aaaagtaatggcaaa--ccgcgatcacttttgcaccaacctaata 62
||||||||||||||| |||| |||||||||| ||||||||||||
Sbjct: 40 aaaagtaatggcaaaagccgcaatcacttttgtaccaacctaata 84
>RF01061;mir-548;AADB02037333.1/77827-77910 9606:Homo sapiens
(human)
Length = 84
Score = 50.1 bits (25), Expect = 3e-06
Identities = 40/44 (90%), Gaps = 2/44 (4%)
Strand = Plus / Minus
Query: 21 aaagtaatggcaaa--ccgcgatcacttttgcaccaacctaata 62
|||||||||||||| || | |||||||||||||||||||||||
Sbjct: 44 aaagtaatggcaaaaaccacaatcacttttgcaccaacctaata 1
>RF01061;mir-548;ABGA01320162.1/292-375 9601:Pongo abelii
(Sumatran orangutan)
Length = 84
Score = 46.1 bits (23), Expect = 5e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 32 aaaccgcgatcacttttgcaccaacctaata 62
||||||| || ||||||||||||||||||||
Sbjct: 54 aaaccgctattacttttgcaccaacctaata 84
>RF01061;mir-548;AADA01051643.1/6626-6709 9598:Pan troglodytes
(chimpanzee)
Length = 84
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 40 atcacttttgcaccaacctaata 62
|||||||||||||||||||||||
Sbjct: 23 atcacttttgcaccaacctaata 1
>RF01061;mir-548;AC163751.3/6942-6859 9598:Pan troglodytes
(chimpanzee)
Length = 84
Score = 46.1 bits (23), Expect = 5e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 32 aaaccgcgatcacttttgcaccaacctaata 62
||||||| |||||||||||||||| ||||||
Sbjct: 54 aaaccgcaatcacttttgcaccaagctaata 84
>RF01061;mir-548;AACZ02112867.1/29891-29976 9598:Pan troglodytes
(chimpanzee)
Length = 86
Score = 46.1 bits (23), Expect = 5e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 32 aaaccgcgatcacttttgcaccaacctaata 62
|||||| ||| ||||||||||||||||||||
Sbjct: 31 aaaccgtgattacttttgcaccaacctaata 1
>RF01061;mir-548;AADB02016093.1/179805-179888 9606:Homo sapiens
(human)
Length = 84
Score = 46.1 bits (23), Expect = 5e-05
Identities = 35/38 (92%), Gaps = 2/38 (5%)
Strand = Plus / Minus
Query: 25 taatggcaaa--ccgcgatcacttttgcaccaacctaa 60
|||||||||| ||||||| ||||||||||||||||||
Sbjct: 40 taatggcaaaacccgcgattacttttgcaccaacctaa 3
Score = 46.1 bits (23), Expect = 5e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 32 aaaccgcgatcacttttgcaccaacctaata 62
|||||| ||| ||||||||||||||||||||
Sbjct: 54 aaaccgtgattacttttgcaccaacctaata 84
>RF01061;mir-548;AADC01022461.1/57990-57907 9606:Homo sapiens
(human)
Length = 84
Score = 46.1 bits (23), Expect = 5e-05
Identities = 38/42 (90%), Gaps = 2/42 (4%)
Strand = Plus / Plus
Query: 22 aagtaatggcaaa--ccgcgatcacttttgcaccaacctaat 61
||||||||||||| |||| || |||||||||||||||||||
Sbjct: 42 aagtaatggcaaaacccgcaattacttttgcaccaacctaat 83
>RF01061;mir-548;AC117444.6/85961-86044 9606:Homo sapiens (human)
Length = 84
Score = 46.1 bits (23), Expect = 5e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 32 aaaccgcgatcacttttgcaccaacctaata 62
||||||| || ||||||||||||||||||||
Sbjct: 54 aaaccgcaattacttttgcaccaacctaata 84
>RF01061;mir-548;AC126755.3/45-128 9606:Homo sapiens (human)
Length = 84
Score = 46.1 bits (23), Expect = 5e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 32 aaaccgcgatcacttttgcaccaacct 58
||||||| |||||||||||||||||||
Sbjct: 54 aaaccgcaatcacttttgcaccaacct 80
>RF01061;mir-548;AC090451.6/112413-112496 9606:Homo sapiens
(human)
Length = 84
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 40 atcacttttgcaccaacctaata 62
|||||||||||||||||||||||
Sbjct: 23 atcacttttgcaccaacctaata 1
Score = 46.1 bits (23), Expect = 5e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 40 atcacttttgcaccaacctaata 62
|||||||||||||||||||||||
Sbjct: 62 atcacttttgcaccaacctaata 84
>RF01061;mir-548;AADD01036043.1/27192-27275 9606:Homo sapiens
(human)
Length = 84
Score = 46.1 bits (23), Expect = 5e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 32 aaaccgcgatcacttttgcaccaacctaata 62
||||||| || ||||||||||||||||||||
Sbjct: 54 aaaccgcaattacttttgcaccaacctaata 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 7 attaggttagtgcaaaagtaat 28
||||||||||||||||||||||
Sbjct: 2 attaggttagtgcaaaagtaat 23
>RF01061;mir-548;ABSL01029623.1/494-577 9606:Homo sapiens (human)
Length = 84
Score = 46.1 bits (23), Expect = 5e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 32 aaaccgcgatcacttttgcaccaacctaata 62
||||||| || ||||||||||||||||||||
Sbjct: 31 aaaccgcaattacttttgcaccaacctaata 1
>RF01061;mir-548;CABD01078688.1/32-114 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 83
Score = 46.1 bits (23), Expect = 5e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 32 aaaccgcgatcacttttgcaccaacctaata 62
|||| ||||| ||||||||||||||||||||
Sbjct: 53 aaactgcgattacttttgcaccaacctaata 83
>RF01061;mir-548;CABD01089019.1/6160-6243 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 46.1 bits (23), Expect = 5e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 32 aaaccgcgatcacttttgcaccaacctaata 62
||||||| || ||||||||||||||||||||
Sbjct: 31 aaaccgcaattacttttgcaccaacctaata 1
>RF01061;mir-548;CABD01688067.1/1028-1113 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 86
Score = 46.1 bits (23), Expect = 5e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 32 aaaccgcgatcacttttgcaccaacctaata 62
||||||| || ||||||||||||||||||||
Sbjct: 56 aaaccgcaattacttttgcaccaacctaata 86
>RF01061;mir-548;CABD01343912.1/1154-1071 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 46.1 bits (23), Expect = 5e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 32 aaaccgcgatcacttttgcaccaacctaata 62
||||||| || ||||||||||||||||||||
Sbjct: 31 aaaccgcaattacttttgcaccaacctaata 1
>RF01061;mir-548;AANU01285209.1/57947-57864 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 46.1 bits (23), Expect = 5e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 32 aaaccgcgatcacttttgcaccaacctaata 62
||||| |||| ||||||||||||||||||||
Sbjct: 31 aaaccacgataacttttgcaccaacctaata 1
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Plus
Query: 32 aaaccgcgatcacttttgcaccaacctaa 60
||||||| || ||||||||||||||||||
Sbjct: 54 aaaccgcaattacttttgcaccaacctaa 82
>RF01061;mir-548;AANU01272376.1/8292-8209 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 46.1 bits (23), Expect = 5e-05
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 32 aaaccgcgatcacttttgcaccaacctaata 62
||||||| || ||||||||||||||||||||
Sbjct: 54 aaaccgcaattacttttgcaccaacctaata 84
>RF01061;mir-548;AANU01170885.1/1-85 9544:Macaca mulatta (rhesus
monkey)
Length = 85
Score = 46.1 bits (23), Expect = 5e-05
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 32 aaaccgcgatcacttttgcaccaacctaata 62
||||||| || ||||||||||||||||||||
Sbjct: 31 aaaccgcaattacttttgcaccaacctaata 1
>RF01061;mir-548;ABBA01068880.1/357-274 9606:Homo sapiens (human)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 32 aaaccgcgatcacttttgcaccaacctaat 61
||||||| || |||||||||||||||||||
Sbjct: 31 aaaccgcaattacttttgcaccaacctaat 2
>RF01061;mir-548;ABSL01062835.1/19063-18980 9606:Homo sapiens
(human)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 40/45 (88%), Gaps = 2/45 (4%)
Strand = Plus / Minus
Query: 20 aaaagtaatggcaaa--ccgcgatcacttttgcaccaacctaata 62
||||||||||||||| || | || ||||||||||||||||||||
Sbjct: 45 aaaagtaatggcaaaaaccacaattacttttgcaccaacctaata 1
>RF01061;mir-548;AADC01143663.1/88187-88104 9606:Homo sapiens
(human)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 40/45 (88%), Gaps = 2/45 (4%)
Strand = Plus / Plus
Query: 20 aaaagtaatggcaa--accgcgatcacttttgcaccaacctaata 62
|||||||||||||| |||||||| |||||||||| | |||||||
Sbjct: 40 aaaagtaatggcaaagaccgcgattacttttgcactagcctaata 84
>RF01061;mir-548;AADB02016080.1/5738062-5737979 9606:Homo sapiens
(human)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 7 attaggttagtgcaaaagtaat 28
||||||||||||||||||||||
Sbjct: 83 attaggttagtgcaaaagtaat 62
>RF01061;mir-548;AADC01102129.1/13137-13054 9606:Homo sapiens
(human)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 37/41 (90%), Gaps = 2/41 (4%)
Strand = Plus / Plus
Query: 21 aaagtaatggcaaa--ccgcgatcacttttgcaccaaccta 59
|||||||||||||| |||| || |||||||||||||||||
Sbjct: 41 aaagtaatggcaaaaaccgcaattacttttgcaccaaccta 81
>RF01061;mir-548;AANU01112255.1/642-725 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 40/45 (88%), Gaps = 2/45 (4%)
Strand = Plus / Plus
Query: 20 aaaagtaatggcaaa--ccgcgatcacttttgcaccaacctaata 62
||||||||||||||| |||| || ||||||||||| ||||||||
Sbjct: 40 aaaagtaatggcaaaagccgcaataacttttgcaccgacctaata 84
>RF01061;mir-548;AANU01290519.1/8633-8716 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 40/45 (88%), Gaps = 2/45 (4%)
Strand = Plus / Minus
Query: 20 aaaagtaatggc--aaaccgcgatcacttttgcaccaacctaata 62
|||||||||||| ||||| | || ||||||||||||||||||||
Sbjct: 45 aaaagtaatggcgaaaaccacaattacttttgcaccaacctaata 1
>RF01061;mir-548;AANU01296214.1/2804-2721 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 40/45 (88%), Gaps = 2/45 (4%)
Strand = Plus / Minus
Query: 20 aaaagtaatggcaaa--ccgcgatcacttttgcaccaacctaata 62
|||||||||| |||| |||| || ||||||||||||||||||||
Sbjct: 45 aaaagtaatgtcaaaacccgcaattacttttgcaccaacctaata 1
>RF01061;mir-548;AANU01106767.1/8226-8143 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 40/45 (88%), Gaps = 2/45 (4%)
Strand = Plus / Plus
Query: 20 aaaagtaatggcaaa--ccgcgatcacttttgcaccaacctaata 62
||||||||||||||| |||| || |||||||||||| |||||||
Sbjct: 40 aaaagtaatggcaaaaaccgcaattacttttgcaccagcctaata 84
>RF01061;mir-548;ABBV01001495.1/1250-1333 447454:candidate
division TM7 single-cell isolate TM7a
Length = 84
Score = 44.1 bits (22), Expect = 2e-04
Identities = 40/45 (88%), Gaps = 2/45 (4%)
Strand = Plus / Plus
Query: 20 aaaagtaatggcaaa--ccgcgatcacttttgcaccaacctaata 62
||||||||||||||| |||| || |||| |||||||||||||||
Sbjct: 40 aaaagtaatggcaaaacccgcaattacttgtgcaccaacctaata 84
>RF01061;mir-548;AC074323.4/95680-95597 9606:Homo sapiens (human)
Length = 84
Score = 42.1 bits (21), Expect = 8e-04
Identities = 36/40 (90%), Gaps = 2/40 (5%)
Strand = Plus / Plus
Query: 20 aaaagtaatggcaaa--ccgcgatcacttttgcaccaacc 57
||||||||||||||| |||| || |||||||||||||||
Sbjct: 40 aaaagtaatggcaaaaaccgcaattacttttgcaccaacc 79
>RF01061;mir-548;AADB02001154.1/69220-69137 9606:Homo sapiens
(human)
Length = 84
Score = 42.1 bits (21), Expect = 8e-04
Identities = 24/25 (96%)
Strand = Plus / Plus
Query: 7 attaggttagtgcaaaagtaatggc 31
|||||||| ||||||||||||||||
Sbjct: 2 attaggttggtgcaaaagtaatggc 26
>RF01061;mir-548;AADC01144176.1/293955-294038 9606:Homo sapiens
(human)
Length = 84
Score = 42.1 bits (21), Expect = 8e-04
Identities = 27/29 (93%)
Strand = Plus / Minus
Query: 33 aaccgcgatcacttttgcaccaacctaat 61
|||||| || |||||||||||||||||||
Sbjct: 30 aaccgcaattacttttgcaccaacctaat 2
>RF01061;mir-548;AL157365.19/15987-15904 9606:Homo sapiens (human)
Length = 84
Score = 42.1 bits (21), Expect = 8e-04
Identities = 39/44 (88%), Gaps = 2/44 (4%)
Strand = Plus / Plus
Query: 21 aaagtaatggcaaa--ccgcgatcacttttgcaccaacctaata 62
|||||||||||||| || |||| || |||||||||||||||||
Sbjct: 41 aaagtaatggcaaaagccacgattacatttgcaccaacctaata 84
>RF01061;mir-548;CABD01001244.1/12488-12571 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 42.1 bits (21), Expect = 8e-04
Identities = 36/40 (90%), Gaps = 2/40 (5%)
Strand = Plus / Minus
Query: 25 taatggcaaa--ccgcgatcacttttgcaccaacctaata 62
|||||||||| |||| || ||||||||||||||||||||
Sbjct: 40 taatggcaaaatccgcaattacttttgcaccaacctaata 1
>RF01061;mir-548;AC202678.6/146907-146824 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 42.1 bits (21), Expect = 8e-04
Identities = 39/44 (88%), Gaps = 2/44 (4%)
Strand = Plus / Plus
Query: 21 aaagtaatggcaaa--ccgcgatcacttttgcaccaacctaata 62
|||||||||||||| |||| || |||||||||||||| |||||
Sbjct: 41 aaagtaatggcaaagaccgcaattacttttgcaccaacataata 84
