miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00692;MIR171_2;AASG02011537.1/4995-5113 3988:Ricinus communis
(castor bean)
Length = 119
Score = 60.0 bits (30), Expect = 9e-09
Identities = 33/34 (97%)
Strand = Plus / Plus
Query: 85 aggcgagccgaatcaatatcactcatgtatgctt 118
|||||||||||||||||||||||| |||||||||
Sbjct: 82 aggcgagccgaatcaatatcactcttgtatgctt 115
>RF00692;MIR171_2;AARH01006308.1/48604-48716 3694:Populus
trichocarpa
Length = 113
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 88 cgagccgaatcaatatcactcatgtatgctt 118
||||||||||||||||||||| |||||||||
Sbjct: 79 cgagccgaatcaatatcactcttgtatgctt 109
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Plus
Query: 26 ggaggagtagacacgacgtgatattggttcggctcatctt 65
|||| |||||||||| ||||||||||| |||||||||||
Sbjct: 2 ggagaagtagacacggtgtgatattggtccggctcatctt 41
>RF00692;MIR171_2;EF424185.1/156-34 49314:Annona cherimola
Length = 123
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 85 aggcgagccgaatcaatatcactcatgtat 114
|||||||||||||||||||||||| |||||
Sbjct: 86 aggcgagccgaatcaatatcactcttgtat 115
>RF00692;MIR171_2;ABIM01001505.1/16686-16573 3649:Carica papaya
(papaya)
Length = 114
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 88 cgagccgaatcaatatcactcatgtatg 115
||||||||||||||||||||| ||||||
Sbjct: 80 cgagccgaatcaatatcactcctgtatg 107
>RF00692;MIR171_2;AARH01005111.1/21886-21779 3694:Populus
trichocarpa
Length = 108
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 88 cgagccgaatcaatatcactcatgtatgctt 118
||||||||||||||||||||| |||| ||||
Sbjct: 74 cgagccgaatcaatatcactcttgtacgctt 104
>RF00692;MIR171_2;CU571241.2/65429-65545 3880:Medicago truncatula
(barrel medic)
Length = 117
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 88 cgagccgaatcaatatcactcatgtatgctt 118
||||||||||||||||||||| ||| |||||
Sbjct: 83 cgagccgaatcaatatcactcttgtttgctt 113
>RF00692;MIR171_2;CAAP02000606.1/45780-45883 29760:Vitis vinifera
Length = 104
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Plus
Query: 88 cgagccgaatcaatatcactcatgtatgctt 118
||||||||| ||||||||||| |||||||||
Sbjct: 70 cgagccgaaccaatatcactcttgtatgctt 100
>RF00692;MIR171_2;BABK01003433.1/149-44 34305:Lotus japonicus
Length = 106
Score = 44.1 bits (22), Expect = 5e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 89 gagccgaatcaatatcactcatgtatgctttttt 122
|||||||||||||||||||| ||| | |||||||
Sbjct: 73 gagccgaatcaatatcactcttgtcttctttttt 106
>RF00692;MIR171_2;ABXC01002937.1/36819-36709 4558:Sorghum bicolor
(sorghum)
Length = 111
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 89 gagccgaatcaatatcactcatgtat 114
|||||||| |||||||||||||||||
Sbjct: 78 gagccgaaccaatatcactcatgtat 103
>RF00692;MIR171_2;ABXC01004402.1/43379-43494 4558:Sorghum bicolor
(sorghum)
Length = 116
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 89 gagccgaatcaatatcactcatgtat 114
|||||||| |||||||||||||||||
Sbjct: 83 gagccgaaccaatatcactcatgtat 108
>RF00692;MIR171_2;AACV01010311.1/27668-27580 39947:Oryza sativa
Japonica Group
Length = 89
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 89 gagccgaatcaatatcactcatgtat 114
|||||||| |||||||||||||||||
Sbjct: 56 gagccgaaccaatatcactcatgtat 81
