miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00017;Metazoa_SRP;AADA01234693.1/3123-2825 9598:Pan troglodytes
(chimpanzee)
Length = 299
Score = 48.1 bits (24), Expect = 2e-05
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 58 gtagagacagggttttgcaacgttgtgcaggcaggtctcaaactcctg 105
||||||||||||||| || | |||| ||||| |||||||||||||||
Sbjct: 118 gtagagacagggtttcgccatgttggccaggctggtctcaaactcctg 71
>RF00017;Metazoa_SRP;CABD01275057.2/3504-3778 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 275
Score = 48.1 bits (24), Expect = 2e-05
Identities = 39/44 (88%)
Strand = Plus / Minus
Query: 59 tagagacagggttttgcaacgttgtgcaggcaggtctcaaactc 102
||||||||||||||||| | |||| ||||| ||||||||||||
Sbjct: 275 tagagacagggttttgccatgttgcccaggctggtctcaaactc 232
>RF00017;Metazoa_SRP;AANN01594745.1/188-486 9365:Erinaceus
europaeus (western European hedgehog)
Length = 299
Score = 46.1 bits (23), Expect = 9e-05
Identities = 36/39 (92%), Gaps = 1/39 (2%)
Strand = Plus / Minus
Query: 1 agtagttgggactacaggcacaacaccaccatgcacagc 39
||||| ||||||||||||||| |||||||||||| ||||
Sbjct: 38 agtagctgggactacaggcac-acaccaccatgcccagc 1
>RF00017;Metazoa_SRP;AADC01003362.1/5618-5894 9606:Homo sapiens
(human)
Length = 277
Score = 46.1 bits (23), Expect = 9e-05
Identities = 41/47 (87%)
Strand = Plus / Minus
Query: 59 tagagacagggttttgcaacgttgtgcaggcaggtctcaaactcctg 105
|||||||||||||| | | ||||| ||||| |||||||||||||||
Sbjct: 277 tagagacagggtttcaccatgttgtccaggctggtctcaaactcctg 231
>RF00017;Metazoa_SRP;ABRP01170611.1/8630-8334 132908:Pteropus
vampyrus (large flying fox)
Length = 297
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 1 agtagttgggactacaggcaca 22
||||||||||||||||||||||
Sbjct: 38 agtagttgggactacaggcaca 17
>RF00017;Metazoa_SRP;ABGA01045104.1/52289-52570 9601:Pongo abelii
(Sumatran orangutan)
Length = 282
Score = 44.1 bits (22), Expect = 4e-04
Identities = 40/46 (86%)
Strand = Plus / Minus
Query: 58 gtagagacagggttttgcaacgttgtgcaggcaggtctcaaactcc 103
||||||||||||||| | |||||| ||||| |||||||||||||
Sbjct: 118 gtagagacagggtttctccacgttggtcaggctggtctcaaactcc 73
>RF00017;Metazoa_SRP;ABGA01352160.1/7823-8133 9601:Pongo abelii
(Sumatran orangutan)
Length = 311
Score = 44.1 bits (22), Expect = 4e-04
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 1 agtagttgggactacaggcacaacaccaccatgc 34
||||| ||||||||||||||| ||||||||||||
Sbjct: 38 agtagctgggactacaggcac-acaccaccatgc 6
>RF00017;Metazoa_SRP;ABGA01251873.1/10297-10016 9601:Pongo abelii
(Sumatran orangutan)
Length = 282
Score = 44.1 bits (22), Expect = 4e-04
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Minus
Query: 1 agtagttgggactacaggcacaacaccaccatgcacagctaa 42
||||||||||| |||||||| | ||||||||||| |||||||
Sbjct: 172 agtagttgggattacaggcata-caccaccatgcccagctaa 132
>RF00017;Metazoa_SRP;AADC01130061.1/7118-6836 9606:Homo sapiens
(human)
Length = 283
Score = 44.1 bits (22), Expect = 4e-04
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Minus
Query: 1 agtagttgggactacaggcacaacaccaccatgcacagctaa 42
||||| ||||||||||||||||| ||||||||| |||||||
Sbjct: 173 agtagctgggactacaggcacaa-gccaccatgcccagctaa 133
>RF00017;Metazoa_SRP;CABD01072515.1/311-1 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 311
Score = 44.1 bits (22), Expect = 4e-04
Identities = 32/34 (94%), Gaps = 1/34 (2%)
Strand = Plus / Minus
Query: 1 agtagttgggactacaggcacaacaccaccatgc 34
||||| ||||||||||||||| ||||||||||||
Sbjct: 38 agtagctgggactacaggcac-acaccaccatgc 6
>RF00017;Metazoa_SRP;CABD01157239.1/4943-5223 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 281
Score = 44.1 bits (22), Expect = 4e-04
Identities = 38/42 (90%), Gaps = 1/42 (2%)
Strand = Plus / Minus
Query: 1 agtagttgggactacaggcacaacaccaccatgcacagctaa 42
||||| ||||||||||||| || ||||||||||| |||||||
Sbjct: 171 agtagctgggactacaggccca-caccaccatgcccagctaa 131
