miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00256;mir-196;ABRQ01101197.1/2188-2097 9813:Procavia capensis
(cape rock hyrax)
Length = 92
Score = 135 bits (68), Expect = 9e-32
Identities = 77/79 (97%), Gaps = 2/79 (2%)
Strand = Plus / Plus
Query: 4 cagaactggtcggtgatttaggtagtttcctgttgttgggatccacctt--tctctcgac 61
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 1 cagaactggtcggtgatttaggtagtttcctgttgttgggatccacctttctctctcgac 60
Query: 62 agcacgacactgccttcat 80
|||||||||||||||||||
Sbjct: 61 agcacgacactgccttcat 79
>RF00256;mir-196;AADN02000989.1/695-605 9031:Gallus gallus
(chicken)
Length = 91
Score = 75.8 bits (38), Expect = 7e-14
Identities = 66/74 (89%), Gaps = 1/74 (1%)
Strand = Plus / Plus
Query: 5 agaactggtcggtgatttaggtagtttcctgttgttggga-tccacctttctctcgacag 63
||||||| || ||| ||||||||||||| |||||||||| |||||||||||||| ||||
Sbjct: 2 agaactgctctgtggtttaggtagtttcatgttgttggggctccacctttctctctacag 61
Query: 64 cacgacactgcctt 77
||||| ||||||||
Sbjct: 62 cacgaaactgcctt 75
>RF00256;mir-196;AAWZ01035904.1/53611-53705 28377:Anolis
carolinensis (green anole)
Length = 95
Score = 69.9 bits (35), Expect = 5e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 5 agaactggtcggtgatttaggtagtttcctgttgttggg 43
|||||||||||||||||||||||||||| ||||||||||
Sbjct: 2 agaactggtcggtgatttaggtagtttcatgttgttggg 40
>RF00256;mir-196;EU025682.1/4924-5014 8030:Salmo salar (Atlantic
salmon)
Length = 91
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 20 tttaggtagtttcctgttgttgggatcca 48
||||||||||||| |||||||||||||||
Sbjct: 17 tttaggtagtttcatgttgttgggatcca 45
>RF00256;mir-196;FJ497005.1/156594-156684 106881:Latimeria
menadoensis (Menado coelacanth)
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 16 gtgatttaggtagtttcctgttgttggg 43
||||||||||||||||| ||||||||||
Sbjct: 13 gtgatttaggtagtttcatgttgttggg 40
>RF00256;mir-196;AC132195.4/6836-6926 31136:Polypterus bichir
Length = 91
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 16 gtgatttaggtagtttcctgttgttggg 43
||||||||||||||||| ||||||||||
Sbjct: 12 gtgatttaggtagtttcatgttgttggg 39
>RF00256;mir-196;AF224262.1/4259-4348 7792:Heterodontus francisci
(horn shark)
Length = 90
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 16 gtgatttaggtagtttcctgttgttggg 43
||||||||||||||||| ||||||||||
Sbjct: 13 gtgatttaggtagtttcatgttgttggg 40
>RF00256;mir-196;AAFR03029824.1/20829-20920 13616:Monodelphis
domestica (gray short-tailed opossum)
Length = 92
Score = 46.1 bits (23), Expect = 7e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 21 ttaggtagtttcctgttgttggg 43
|||||||||||||||||||||||
Sbjct: 18 ttaggtagtttcctgttgttggg 40
>RF00256;mir-196;AADN02070198.1/2795-2886 9031:Gallus gallus
(chicken)
Length = 92
Score = 46.1 bits (23), Expect = 7e-05
Identities = 35/39 (89%)
Strand = Plus / Plus
Query: 5 agaactggtcggtgatttaggtagtttcctgttgttggg 43
||||||| || |||| |||||||||||| ||||||||||
Sbjct: 2 agaactgctctgtgaattaggtagtttcatgttgttggg 40
>RF00256;mir-196;AC149508.2/54375-54285 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 91
Score = 46.1 bits (23), Expect = 7e-05
Identities = 51/59 (86%), Gaps = 1/59 (1%)
Strand = Plus / Plus
Query: 20 tttaggtagtttcctgttgttggg-atccacctttctctcgacagcacgacactgcctt 77
|||||||||||| |||||||||| || |||||||||||| ||| || || ||||||||
Sbjct: 17 tttaggtagttttatgttgttgggcattcacctttctctctacaacaagaaactgcctt 75
>RF00256;mir-196;BX927395.18/57996-57904 7955:Danio rerio
(zebrafish)
Length = 93
Score = 46.1 bits (23), Expect = 7e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 9 ctggtcggtgatttaggtagtttcctgttgttggg 43
|||||| ||||||||||||||||| |||||||||
Sbjct: 6 ctggtctgtgatttaggtagtttcaagttgttggg 40
>RF00256;mir-196;AAVX01058829.1/1428-1517 7868:Callorhinchus milii
(ghost shark)
Length = 90
Score = 46.1 bits (23), Expect = 7e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 20 tttaggtagtttcctgttgttgggatc 46
||||||||||||| |||||||||||||
Sbjct: 17 tttaggtagtttcatgttgttgggatc 43
>RF00256;mir-196;AADN02023992.1/310-221 9031:Gallus gallus
(chicken)
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 tttaggtagtttcctgttgttgggat 45
||||||||||||| ||||||||||||
Sbjct: 17 tttaggtagtttcatgttgttgggat 42
>RF00256;mir-196;CR382300.12/76136-76225 7955:Danio rerio
(zebrafish)
Length = 90
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 20 tttaggtagtttcctgttgttgggat 45
||||||||||||| ||||||||||||
Sbjct: 17 tttaggtagtttcatgttgttgggat 42
