miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
(papaya)
Length = 91
Score = 89.7 bits (45), Expect = 7e-18
Identities = 81/89 (91%), Gaps = 3/89 (3%)
Strand = Plus / Minus
Query: 9 gctggatgcagaggtttatcgatcgattcatgtatttgtgttattctcacaacaaaattc 68
||||||||||||||||||||||||||||||||| | |||| | || |||| || ||||||
Sbjct: 91 gctggatgcagaggtttatcgatcgattcatgt-tctgtgat-ttttcac-accaaattc 35
Query: 69 tcaggaagagatcgatgaaccgctgcctc 97
||||||||||||||||||||||||||||
Sbjct: 34 ccaggaagagatcgatgaaccgctgcctc 6
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
(castor bean)
Length = 96
Score = 77.8 bits (39), Expect = 3e-14
Identities = 80/91 (87%), Gaps = 2/91 (2%)
Strand = Plus / Minus
Query: 9 gctggatgcagaggtttatcgatcgattcatg-tatttgtgttattctcacaacaaaat- 66
|||||||||||||||||||||||||||||||| ||| | || | ||||||||||||
Sbjct: 96 gctggatgcagaggtttatcgatcgattcatgcgttttatttttgtttcacaacaaaatc 37
Query: 67 tctcaggaagagatcgatgaaccgctgcctc 97
| ||||||||||||||||||||||||||||
Sbjct: 36 ttccaggaagagatcgatgaaccgctgcctc 6
>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
(thale cress)
Length = 91
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 9 gctggatgcagaggtttatcgatcgattc 37
|||||||||||||||||||||||||||||
Sbjct: 91 gctggatgcagaggtttatcgatcgattc 63
>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
trichocarpa
Length = 91
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 9 gctggatgcagaggtttatcgatcgattcatgt 41
||||||||||||||||||||||||| |||||||
Sbjct: 91 gctggatgcagaggtttatcgatcggttcatgt 59
>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
(barrel medic)
Length = 90
Score = 58.0 bits (29), Expect = 2e-08
Identities = 32/33 (96%)
Strand = Plus / Minus
Query: 9 gctggatgcagaggtttatcgatcgattcatgt 41
|||||||||||||||||||||| ||||||||||
Sbjct: 90 gctggatgcagaggtttatcgaccgattcatgt 58
>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
(sorghum)
Length = 132
Score = 58.0 bits (29), Expect = 2e-08
Identities = 29/29 (100%)
Strand = Plus / Minus
Query: 9 gctggatgcagaggtttatcgatcgattc 37
|||||||||||||||||||||||||||||
Sbjct: 132 gctggatgcagaggtttatcgatcgattc 104
>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 70 caggaagagatcgatgaaccgctgcctc 97
||||||||||||||||||||||||||||
Sbjct: 33 caggaagagatcgatgaaccgctgcctc 6
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Minus
Query: 9 gctggatgcagaggtttatcgatcgattcatg 40
|||||||||||||||||||||||| |||||||
Sbjct: 88 gctggatgcagaggtttatcgatctattcatg 57
>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
Group
Length = 158
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 10 ctggatgcagaggtttatcgatcgattc 37
||||||||||||||||||||||||||||
Sbjct: 157 ctggatgcagaggtttatcgatcgattc 130
>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
Indica Group
Length = 159
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 10 ctggatgcagaggtttatcgatcgattc 37
||||||||||||||||||||||||||||
Sbjct: 158 ctggatgcagaggtttatcgatcgattc 131
>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
Length = 88
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Minus
Query: 69 tcaggaagagatcgatgaaccgctgc 94
||||||||||||||||||||||||||
Sbjct: 34 tcaggaagagatcgatgaaccgctgc 9
>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
Length = 91
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 69 tcaggaagagatcgatgaaccgctgcctc 97
||||||| |||||||||||||||||||||
Sbjct: 34 tcaggaaaagatcgatgaaccgctgcctc 6
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 10 ctggatgcagaggtttatcgatcg 33
||||||||||||||||||||||||
Sbjct: 90 ctggatgcagaggtttatcgatcg 67
>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
Length = 133
Score = 50.1 bits (25), Expect = 6e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 9 gctggatgcagaggtttatcgatcgattc 37
|||||||||||||||||||||| ||||||
Sbjct: 133 gctggatgcagaggtttatcgaccgattc 105
>RF00742;MIR162_2;AACV01010015.1/69608-69724 39947:Oryza sativa
Japonica Group
Length = 117
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 10 ctggatgcagaggtttatcgatcgattc 37
||||||||||||| ||||||||||||||
Sbjct: 116 ctggatgcagaggcttatcgatcgattc 89
