miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01061;mir-548;AADC01126060.1/253363-253446 9606:Homo sapiens
(human)
Length = 84
Score = 56.0 bits (28), Expect = 9e-08
Identities = 34/36 (94%)
Strand = Plus / Minus
Query: 62 ggcaaaaaccgcaattacttttgcgccattctaata 97
|||||||||||||||||||||||| ||| |||||||
Sbjct: 36 ggcaaaaaccgcaattacttttgcaccactctaata 1
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 62 ggcaaaaaccgcaattacttttgc 85
||||||||||||||||||||||||
Sbjct: 49 ggcaaaaaccgcaattacttttgc 72
>RF01061;mir-548;AP001729.1/31449-31355 9606:Homo sapiens (human)
Length = 95
Score = 56.0 bits (28), Expect = 9e-08
Identities = 28/28 (100%)
Strand = Plus / Minus
Query: 62 ggcaaaaaccgcaattacttttgcgcca 89
||||||||||||||||||||||||||||
Sbjct: 36 ggcaaaaaccgcaattacttttgcgcca 9
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 66 aaaaccgcaattacttttgcgcca 89
||||||||||||||||||||||||
Sbjct: 64 aaaaccgcaattacttttgcgcca 87
>RF01061;mir-548;AC111199.4/17434-17350 9606:Homo sapiens (human)
Length = 85
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 61 gggcaaaaaccgcaattacttttgc 85
|||||||||||||||||||||||||
Sbjct: 48 gggcaaaaaccgcaattacttttgc 72
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 58 aatgggcaaaaaccgcaattacttttgc 85
|||||||||||||| |||||||||||||
Sbjct: 40 aatgggcaaaaaccacaattacttttgc 13
>RF01061;mir-548;ABGA01227794.1/7074-6991 9601:Pongo abelii
(Sumatran orangutan)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 62 ggcaaaaaccgcaattacttttgc 85
||||||||||||||||||||||||
Sbjct: 36 ggcaaaaaccgcaattacttttgc 13
>RF01061;mir-548;AACZ02013314.1/14210-14127 9598:Pan troglodytes
(chimpanzee)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 62 ggcaaaaaccgcaattacttttgcgccattctaata 97
||||||||||||||| |||||||| ||| |||||||
Sbjct: 49 ggcaaaaaccgcaataacttttgcaccaatctaata 84
>RF01061;mir-548;AC074323.4/95680-95597 9606:Homo sapiens (human)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 62 ggcaaaaaccgcaattacttttgc 85
||||||||||||||||||||||||
Sbjct: 36 ggcaaaaaccgcaattacttttgc 13
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 62 ggcaaaaaccgcaattacttttgc 85
||||||||||||||||||||||||
Sbjct: 49 ggcaaaaaccgcaattacttttgc 72
>RF01061;mir-548;AADC01015139.1/1187-1100 9606:Homo sapiens
(human)
Length = 88
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 62 ggcaaaaaccgcaattacttttgc 85
||||||||||||||||||||||||
Sbjct: 36 ggcaaaaaccgcaattacttttgc 13
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 62 ggcaaaaaccgcaattacttttgc 85
||||||||||||||||||||||||
Sbjct: 53 ggcaaaaaccgcaattacttttgc 76
>RF01061;mir-548;AADC01117423.1/979850-979767 9606:Homo sapiens
(human)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 62 ggcaaaaaccgcaattacttttgc 85
||||||||||||||||||||||||
Sbjct: 36 ggcaaaaaccgcaattacttttgc 13
>RF01061;mir-548;AADB02010442.1/1775967-1775884 9606:Homo sapiens
(human)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 62 ggcaaaaaccgcaattacttttgc 85
||||||||||||||||||||||||
Sbjct: 36 ggcaaaaaccgcaattacttttgc 13
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 64 caaaaaccgcaattacttttgc 85
||||||||||||||||||||||
Sbjct: 51 caaaaaccgcaattacttttgc 72
>RF01061;mir-548;ABSL01073318.1/15548-15465 9606:Homo sapiens
(human)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 62 ggcaaaaaccgcaattacttttgc 85
||||||||||||||||||||||||
Sbjct: 36 ggcaaaaaccgcaattacttttgc 13
>RF01061;mir-548;AC117444.6/85961-86044 9606:Homo sapiens (human)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 62 ggcaaaaaccgcaattacttttgc 85
||||||||||||||||||||||||
Sbjct: 49 ggcaaaaaccgcaattacttttgc 72
>RF01061;mir-548;AADC01102129.1/13137-13054 9606:Homo sapiens
(human)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 62 ggcaaaaaccgcaattacttttgc 85
||||||||||||||||||||||||
Sbjct: 49 ggcaaaaaccgcaattacttttgc 72
>RF01061;mir-548;CABD01355261.2/2635-2552 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 62 ggcaaaaaccgcaattacttttgc 85
||||||||||||||||||||||||
Sbjct: 36 ggcaaaaaccgcaattacttttgc 13
>RF01061;mir-548;CABD01089019.1/6160-6243 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 62 ggcaaaaaccgcaattacttttgc 85
||||||||||||||||||||||||
Sbjct: 36 ggcaaaaaccgcaattacttttgc 13
>RF01061;mir-548;CABD01343912.1/1154-1071 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 62 ggcaaaaaccgcaattacttttgc 85
||||||||||||||||||||||||
Sbjct: 36 ggcaaaaaccgcaattacttttgc 13
>RF01061;mir-548;CABD01085041.1/3135-3052 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 62 ggcaaaaaccgcaattacttttgc 85
||||||||||||||||||||||||
Sbjct: 36 ggcaaaaaccgcaattacttttgc 13
>RF01061;mir-548;AC198186.3/82008-82091 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 62 ggcaaaaaccgcaattacttttgc 85
||||||||||||||||||||||||
Sbjct: 36 ggcaaaaaccgcaattacttttgc 13
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 62 ggcaaaaaccgcaattacttttg 84
|||||||||||||||||||||||
Sbjct: 49 ggcaaaaaccgcaattacttttg 71
>RF01061;mir-548;AANU01106767.1/8226-8143 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 62 ggcaaaaaccgcaattacttttgc 85
||||||||||||||||||||||||
Sbjct: 49 ggcaaaaaccgcaattacttttgc 72
>RF01061;mir-548;AANU01170885.1/1-85 9544:Macaca mulatta (rhesus
monkey)
Length = 85
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 62 ggcaaaaaccgcaattacttttgc 85
||||||||||||||||||||||||
Sbjct: 36 ggcaaaaaccgcaattacttttgc 13
>RF01061;mir-548;AANU01248525.1/14264-14347 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 62 ggcaaaaaccgcaattacttttgcgccattctaata 97
||||||||||||||||||||||| ||| |||||||
Sbjct: 49 ggcaaaaaccgcaattacttttgtaccaatctaata 84
>RF01061;mir-548;ABSL01029623.1/494-577 9606:Homo sapiens (human)
Length = 84
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 63 gcaaaaaccgcaattacttttgc 85
|||||||||||||||||||||||
Sbjct: 35 gcaaaaaccgcaattacttttgc 13
>RF01061;mir-548;CABD01117548.1/2434-2351 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 gcaaaaaccgcaattacttttgc 85
|||||||||||||||||||||||
Sbjct: 50 gcaaaaaccgcaattacttttgc 72
>RF01061;mir-548;CABD01524054.2/315-398 9595:Gorilla gorilla
gorilla (Western lowland gorilla)
Length = 84
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 63 gcaaaaaccgcaattacttttgc 85
|||||||||||||||||||||||
Sbjct: 35 gcaaaaaccgcaattacttttgc 13
>RF01061;mir-548;AANU01270843.1/85523-85605 9544:Macaca mulatta
(rhesus monkey)
Length = 83
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 63 gcaaaaaccgcaattacttttgc 85
|||||||||||||||||||||||
Sbjct: 49 gcaaaaaccgcaattacttttgc 71
>RF01061;mir-548;AC003681.1/24588-24671 9606:Homo sapiens (human)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 31/34 (91%)
Strand = Plus / Minus
Query: 62 ggcaaaaaccgcaattacttttgcgccattctaa 95
|||||||||| ||||||||||||| ||| |||||
Sbjct: 36 ggcaaaaaccacaattacttttgcaccaatctaa 3
>RF01061;mir-548;AANU01274414.1/2282-2365 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 25/26 (96%)
Strand = Plus / Minus
Query: 64 caaaaaccgcaattacttttgcgcca 89
|||||| |||||||||||||||||||
Sbjct: 34 caaaaatcgcaattacttttgcgcca 9
>RF01061;mir-548;AANU01285209.1/57947-57864 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 64 caaaaaccgcaattacttttgc 85
||||||||||||||||||||||
Sbjct: 51 caaaaaccgcaattacttttgc 72
>RF01061;mir-548;AC202678.6/146907-146824 9544:Macaca mulatta
(rhesus monkey)
Length = 84
Score = 44.1 bits (22), Expect = 3e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 64 caaaaaccgcaattacttttgc 85
||||||||||||||||||||||
Sbjct: 34 caaaaaccgcaattacttttgc 13
