miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00742;MIR162_2;ABIM01004242.1/4343-4433 3649:Carica papaya
(papaya)
Length = 91
Score = 63.9 bits (32), Expect = 6e-10
Identities = 81/94 (86%), Gaps = 5/94 (5%)
Strand = Plus / Plus
Query: 29 cactggaggcaacggttcatcgatctcttcct--gaatttggctgtggaatcatacacaa 86
||||||||||| |||||||||||||||||||| |||||||| |||| || | ||||
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctgggaatttgg-tgtgaaa--aatcacag 57
Query: 87 agcaagaatcggtcgataaacctctgcatccagc 120
| || |||||| ||||||||||||||||||||||
Sbjct: 58 aacatgaatcgatcgataaacctctgcatccagc 91
>RF00742;MIR162_2;AB006708.1/30672-30582 3702:Arabidopsis thaliana
(thale cress)
Length = 91
Score = 63.9 bits (32), Expect = 6e-10
Identities = 35/36 (97%)
Strand = Plus / Plus
Query: 85 aaagcaagaatcggtcgataaacctctgcatccagc 120
||||||||||||| ||||||||||||||||||||||
Sbjct: 56 aaagcaagaatcgatcgataaacctctgcatccagc 91
>RF00742;MIR162_2;AM451502.1/2540-2627 29760:Vitis vinifera
Length = 88
Score = 63.9 bits (32), Expect = 6e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 89 caagaatcggtcgataaacctctgcatccagc 120
||||||||||||||||||||||||||||||||
Sbjct: 57 caagaatcggtcgataaacctctgcatccagc 88
>RF00742;MIR162_2;AARH01005287.1/78295-78385 3694:Populus
trichocarpa
Length = 91
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 29 cactggaggcaacggttcatcgatctcttcctg 61
||||||||||| |||||||||||||||||||||
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctg 33
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 99 tcgataaacctctgcatccagc 120
||||||||||||||||||||||
Sbjct: 70 tcgataaacctctgcatccagc 91
>RF00742;MIR162_2;AASG02018381.1/677-582 3988:Ricinus communis
(castor bean)
Length = 96
Score = 58.0 bits (29), Expect = 4e-08
Identities = 32/33 (96%)
Strand = Plus / Plus
Query: 29 cactggaggcaacggttcatcgatctcttcctg 61
||||||||||| |||||||||||||||||||||
Sbjct: 1 cactggaggcagcggttcatcgatctcttcctg 33
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 92 gaatcggtcgataaacctctgcatccagc 120
|||||| ||||||||||||||||||||||
Sbjct: 68 gaatcgatcgataaacctctgcatccagc 96
>RF00742;MIR162_2;AC162031.12/99168-99079 3880:Medicago truncatula
(barrel medic)
Length = 90
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 92 gaatcggtcgataaacctctgcatccagc 120
|||||||||||||||||||||||||||||
Sbjct: 62 gaatcggtcgataaacctctgcatccagc 90
Score = 52.0 bits (26), Expect = 2e-06
Identities = 35/38 (92%)
Strand = Plus / Plus
Query: 29 cactggaggcaacggttcatcgatctcttcctgaattt 66
||||||| ||| |||||||||||||| |||||||||||
Sbjct: 1 cactggatgcagcggttcatcgatctgttcctgaattt 38
>RF00742;MIR162_2;BT061256.1/316-448 4577:Zea mays
Length = 133
Score = 58.0 bits (29), Expect = 4e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 92 gaatcggtcgataaacctctgcatccagc 120
|||||||||||||||||||||||||||||
Sbjct: 105 gaatcggtcgataaacctctgcatccagc 133
>RF00742;MIR162_2;EU548677.1/192-105 3702:Arabidopsis thaliana
(thale cress)
Length = 88
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 31 ctggaggcaacggttcatcgatctcttcctg 61
||||||||| |||||||||||||||||||||
Sbjct: 3 ctggaggcagcggttcatcgatctcttcctg 33
Score = 48.1 bits (24), Expect = 3e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 85 aaagcaagaatcggtcgataaacctctgcatccagc 120
|||||| |||| | ||||||||||||||||||||||
Sbjct: 53 aaagcatgaatagatcgataaacctctgcatccagc 88
>RF00742;MIR162_2;AY728420.1/1-91 3694:Populus trichocarpa
Length = 91
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 29 cactggaggcaacggttcatcgatctcttcctgaa 63
||||||||||| |||||||||||||| ||||||||
Sbjct: 1 cactggaggcagcggttcatcgatcttttcctgaa 35
>RF00742;MIR162_2;ABXC01002838.1/886-1017 4558:Sorghum bicolor
(sorghum)
Length = 132
Score = 50.1 bits (25), Expect = 9e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 92 gaatcggtcgataaacctctgcatccagc 120
|||||| ||||||||||||||||||||||
Sbjct: 104 gaatcgatcgataaacctctgcatccagc 132
>RF00742;MIR162_2;AK073954.1/290-447 39947:Oryza sativa Japonica
Group
Length = 158
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 92 gaatcggtcgataaacctctgcatccag 119
|||||| |||||||||||||||||||||
Sbjct: 130 gaatcgatcgataaacctctgcatccag 157
>RF00742;MIR162_2;AAAA02006876.1/21311-21153 39946:Oryza sativa
Indica Group
Length = 159
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 92 gaatcggtcgataaacctctgcatccag 119
|||||| |||||||||||||||||||||
Sbjct: 131 gaatcgatcgataaacctctgcatccag 158
