miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00052;lin-4;AAQQ01300049.1/868-937 43179:Spermophilus
tridecemlineatus (thirteen-lined ground squirrel)
Length = 70
Score = 97.6 bits (49), Expect = 2e-20
Identities = 65/69 (94%), Gaps = 1/69 (1%)
Strand = Plus / Plus
Query: 13 tcagtccctgagaccctaactagtgaggtttaccgtttaaatccacgggttaggctctcg 72
||||||||||||||||||||| |||| ||||||||||||||| ||||||||||||||| |
Sbjct: 3 tcagtccctgagaccctaacttgtgatgtttaccgtttaaat-cacgggttaggctcttg 61
Query: 73 ggagctgcg 81
|||||||||
Sbjct: 62 ggagctgcg 70
>RF00052;lin-4;ABRQ01266683.1/74-144 9813:Procavia capensis (cape
rock hyrax)
Length = 71
Score = 97.6 bits (49), Expect = 2e-20
Identities = 61/65 (93%)
Strand = Plus / Plus
Query: 17 tccctgagaccctaactagtgaggtttaccgtttaaatccacgggttaggctctcgggag 76
||||||||||||||| | |||| ||||||||||||||||||||||||||||||| |||||
Sbjct: 7 tccctgagaccctaatttgtgatgtttaccgtttaaatccacgggttaggctcttgggag 66
Query: 77 ctgcg 81
|||||
Sbjct: 67 ctgcg 71
>RF00052;lin-4;AAWZ01018120.1/1937-2007 28377:Anolis carolinensis
(green anole)
Length = 71
Score = 71.9 bits (36), Expect = 1e-12
Identities = 57/64 (89%)
Strand = Plus / Plus
Query: 16 gtccctgagaccctaactagtgaggtttaccgtttaaatccacgggttaggctctcggga 75
|||||||||||||||||| |||| ||||| ||||| ||||||||||||||||| ||||
Sbjct: 6 gtccctgagaccctaacttgtgacgtttagtttttaagtccacgggttaggctcttggga 65
Query: 76 gctg 79
||||
Sbjct: 66 gctg 69
>RF00052;lin-4;AAVX01166684.1/76-6 7868:Callorhinchus milii (ghost
shark)
Length = 71
Score = 69.9 bits (35), Expect = 6e-12
Identities = 56/63 (88%)
Strand = Plus / Plus
Query: 13 tcagtccctgagaccctaactagtgaggtttaccgtttaaatccacgggttaggctctcg 72
||||||||||||||||||||| |||| ||||| | | | ||||||||||||||||||| |
Sbjct: 3 tcagtccctgagaccctaacttgtgatgtttaacttcttaatccacgggttaggctcttg 62
Query: 73 gga 75
|||
Sbjct: 63 gga 65
>RF00052;lin-4;AADN02042928.1/16455-16525 9031:Gallus gallus
(chicken)
Length = 71
Score = 50.1 bits (25), Expect = 5e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 15 agtccctgagaccctaactagtgaggttt 43
||||||||||||||||||| |||||||||
Sbjct: 5 agtccctgagaccctaacttgtgaggttt 33
>RF00052;lin-4;BAAF04027540.1/8397-8327 8090:Oryzias latipes
(Japanese medaka)
Length = 71
Score = 48.1 bits (24), Expect = 2e-05
Identities = 54/64 (84%)
Strand = Plus / Plus
Query: 16 gtccctgagaccctaactagtgaggtttaccgtttaaatccacgggttaggctctcggga 75
|||||||||||||||||| |||| ||| | || | |||||||||| |||||||||||
Sbjct: 6 gtccctgagaccctaacttgtgacgttgttctttcatgtccacgggtttggctctcggga 65
Query: 76 gctg 79
||||
Sbjct: 66 gctg 69
>RF00052;lin-4;ABRQ01036339.1/2289-2358 9813:Procavia capensis
(cape rock hyrax)
Length = 70
Score = 46.1 bits (23), Expect = 8e-05
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 15 agtccctgagaccctaactagtgaggt 41
||||||||||||||||||| |||||||
Sbjct: 5 agtccctgagaccctaacttgtgaggt 31
>RF00052;lin-4;BX663520.9/242554-242624 7955:Danio rerio
(zebrafish)
Length = 71
Score = 46.1 bits (23), Expect = 8e-05
Identities = 53/63 (84%)
Strand = Plus / Plus
Query: 17 tccctgagaccctaactagtgaggtttaccgtttaaatccacgggttaggctctcgggag 76
||||||||||||||||| |||| |||| || ||| | ||||||||||| ||| |||||
Sbjct: 7 tccctgagaccctaacttgtgacgttttcctgttatgtgcacgggttaggttcttgggag 66
Query: 77 ctg 79
|||
Sbjct: 67 ctg 69
