miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00247;mir-160;AC161399.2/100084-100170 3880:Medicago truncatula
(barrel medic)
Length = 87
Score = 65.9 bits (33), Expect = 1e-10
Identities = 73/85 (85%), Gaps = 1/85 (1%)
Strand = Plus / Plus
Query: 21 tgcctggctccctgaatgccatctaagaagcttgttaaagagtgttgacaaccttcctat 80
|||||||||||||||||||||||| |||||||||| ||| | ||| ||||||| | ||
Sbjct: 4 tgcctggctccctgaatgccatctgagaagcttgtcaaa-acgattggcaacctttccat 62
Query: 81 ttggcatgaggggagtcaagcaggc 105
||||||||| ||||| || ||||||
Sbjct: 63 ttggcatgaagggagccatgcaggc 87
>RF00247;mir-160;AASG02006050.1/4122-4208 3988:Ricinus communis
(castor bean)
Length = 87
Score = 60.0 bits (30), Expect = 7e-09
Identities = 73/86 (84%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 19 tctgcctggctccctgaatgccatctaagaagcttgttaaagagtgttgacaaccttcct 78
|||||||||||||||| |||||| |||||||| || | || ||| ||||||| | ||||
Sbjct: 2 tctgcctggctccctggatgccaactaagaagtttatcaatgagcattgacaa-catcct 60
Query: 79 atttggcatgaggggagtcaagcagg 104
| ||||||| || |||||||||||||
Sbjct: 61 agttggcatcagaggagtcaagcagg 86
>RF00247;mir-160;ABXC01005049.1/42369-42278 4558:Sorghum bicolor
(sorghum)
Length = 92
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 ctgcctggctccctgaatgccatc 43
||||||||||||||||||||||||
Sbjct: 3 ctgcctggctccctgaatgccatc 26
>RF00247;mir-160;AY551219.1/24-109 4530:Oryza sativa (rice)
Length = 86
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 20 ctgcctggctccctgaatgccatc 43
||||||||||||||||||||||||
Sbjct: 3 ctgcctggctccctgaatgccatc 26
