miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;CAAP02004587.1/23864-24010 29760:Vitis vinifera
Length = 147
Score = 272 bits (137), Expect = 1e-72
Identities = 137/137 (100%)
Strand = Plus / Plus
Query: 1 cggtggtctctaattcgcttggtgcaggtcgggaaccgacttcgccgctccggcagcgcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5 cggtggtctctaattcgcttggtgcaggtcgggaaccgacttcgccgctccggcagcgcc 64
Query: 61 ggaggcacgcggcggcctacgattggttgctgagcgaattccgatcccgccttgcatcaa 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 65 ggaggcacgcggcggcctacgattggttgctgagcgaattccgatcccgccttgcatcaa 124
Query: 121 ctgaatcggagacggcg 137
|||||||||||||||||
Sbjct: 125 ctgaatcggagacggcg 141
>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 65.9 bits (33), Expect = 1e-10
Identities = 33/33 (100%)
Strand = Plus / Plus
Query: 5 ggtctctaattcgcttggtgcaggtcgggaacc 37
|||||||||||||||||||||||||||||||||
Sbjct: 9 ggtctctaattcgcttggtgcaggtcgggaacc 41
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 103 gatcccgccttgcatcaactgaatcggag 131
|||||||||||||||||||||||||||||
Sbjct: 81 gatcccgccttgcatcaactgaatcggag 109
>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
trichocarpa
Length = 155
Score = 63.9 bits (32), Expect = 5e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 5 ggtctctaattcgcttggtgcaggtcgggaac 36
||||||||||||||||||||||||||||||||
Sbjct: 9 ggtctctaattcgcttggtgcaggtcgggaac 40
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 103 gatcccgccttgcatcaactgaatcggagac 133
|||||||||||||||||||||||||||||||
Sbjct: 115 gatcccgccttgcatcaactgaatcggagac 145
>RF00677;MIR168;AASG02009178.1/8089-7934 3988:Ricinus communis
(castor bean)
Length = 156
Score = 63.9 bits (32), Expect = 5e-10
Identities = 32/32 (100%)
Strand = Plus / Plus
Query: 5 ggtctctaattcgcttggtgcaggtcgggaac 36
||||||||||||||||||||||||||||||||
Sbjct: 9 ggtctctaattcgcttggtgcaggtcgggaac 40
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Plus
Query: 103 gatcccgccttgcatcaactgaatcggagac 133
|||||||||||||||||||||||||| ||||
Sbjct: 116 gatcccgccttgcatcaactgaatcgaagac 146
>RF00677;MIR168;ABIM01019962.1/1-76 3649:Carica papaya (papaya)
Length = 76
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Plus
Query: 103 gatcccgccttgcatcaactgaatcggagac 133
|||||||||||||||||||||||||||||||
Sbjct: 36 gatcccgccttgcatcaactgaatcggagac 66
>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
Length = 139
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 103 gatcccgccttgcatcaactgaatcggag 131
|||||||||||||||||||||||||||||
Sbjct: 97 gatcccgccttgcatcaactgaatcggag 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 attcgcttggtgcaggtcgggaac 36
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
Length = 139
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 103 gatcccgccttgcatcaactgaatcggag 131
|||||||||||||||||||||||||||||
Sbjct: 97 gatcccgccttgcatcaactgaatcggag 125
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 attcgcttggtgcaggtcgggaac 36
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
Length = 139
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 103 gatcccgccttgcatcaactgaatcggag 131
|||||||||||||||||||||||||||||
Sbjct: 98 gatcccgccttgcatcaactgaatcggag 126
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 attcgcttggtgcaggtcgggaacc 37
|||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacc 41
>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
Length = 137
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 103 gatcccgccttgcatcaactgaatcggag 131
|||||||||||||||||||||||||||||
Sbjct: 95 gatcccgccttgcatcaactgaatcggag 123
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 attcgcttggtgcaggtcgggaacc 37
|||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacc 41
>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
Length = 136
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 103 gatcccgccttgcatcaactgaatcggag 131
|||||||||||||||||||||||||||||
Sbjct: 96 gatcccgccttgcatcaactgaatcggag 124
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 attcgcttggtgcaggtcgggaac 36
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
Length = 179
Score = 58.0 bits (29), Expect = 3e-08
Identities = 29/29 (100%)
Strand = Plus / Plus
Query: 103 gatcccgccttgcatcaactgaatcggag 131
|||||||||||||||||||||||||||||
Sbjct: 139 gatcccgccttgcatcaactgaatcggag 167
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 5 ggtctctaattcgcttggtgcaggtcgggaac 36
||||||| ||||||||||||||||||||||||
Sbjct: 9 ggtctctgattcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900009.1/86-211 50463:Cardamine hirsuta (hairy
bittercress)
Length = 126
Score = 56.0 bits (28), Expect = 1e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 5 ggtctctaattcgcttggtgcaggtcgggaac 36
||||||| ||||||||||||||||||||||||
Sbjct: 9 ggtctctgattcgcttggtgcaggtcgggaac 40
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 105 tcccgccttgcatcaactgaatc 127
|||||||||||||||||||||||
Sbjct: 88 tcccgccttgcatcaactgaatc 110
>RF00677;MIR168;AM900031.1/134-271 50463:Cardamine hirsuta (hairy
bittercress)
Length = 138
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 103 gatcccgccttgcatcaactgaatcgga 130
||||||||||||||||||||||||||||
Sbjct: 97 gatcccgccttgcatcaactgaatcgga 124
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 attcgcttggtgcaggtcgggaac 36
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;DQ108858.1/128-269 3702:Arabidopsis thaliana (thale
cress)
Length = 142
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 103 gatcccgccttgcatcaactgaatcgga 130
||||||||||||||||||||||||||||
Sbjct: 101 gatcccgccttgcatcaactgaatcgga 128
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 attcgcttggtgcaggtcgggaacc 37
|||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacc 41
>RF00677;MIR168;AM900035.1/113-248 264416:Diplotaxis tenuifolia
Length = 136
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 105 tcccgccttgcatcaactgaatcggag 131
|||||||||||||||||||||||||||
Sbjct: 96 tcccgccttgcatcaactgaatcggag 122
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 13 attcgcttggtgcaggtcggga 34
||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggga 38
>RF00677;MIR168;AM900033.1/151-286 71322:Calepina irregularis
Length = 136
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 105 tcccgccttgcatcaactgaatcggag 131
|||||||||||||||||||||||||||
Sbjct: 98 tcccgccttgcatcaactgaatcggag 124
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 attcgcttggtgcaggtcgggaac 36
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;CU302337.1/59396-59285 3880:Medicago truncatula
(barrel medic)
Length = 112
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 8 ctctaattcgcttggtgcaggtcgggaacc 37
|||| |||||||||||||||||||||||||
Sbjct: 12 ctctgattcgcttggtgcaggtcgggaacc 41
>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa
subsp. pekinensis
Length = 137
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 13 attcgcttggtgcaggtcgggaacc 37
|||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaacc 41
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 103 gatcccgccttgcatcaactgaatcggag 131
|||||||||||||||||| ||||||||||
Sbjct: 95 gatcccgccttgcatcaaatgaatcggag 123
>RF00677;MIR168;AM900001.1/83-191 72657:Aethionema grandiflorum
Length = 109
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 4 tggtctctaattcgcttggtgcaggtcgggaac 36
||||||| ||||||||||||||||||||||||
Sbjct: 8 tggtctcagattcgcttggtgcaggtcgggaac 40
Score = 50.1 bits (25), Expect = 8e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 103 gatcccgccttgcatcaactgaatc 127
|||||||||||||||||||||||||
Sbjct: 69 gatcccgccttgcatcaactgaatc 93
>RF00677;MIR168;AM900013.1/66-191 313683:Malcolmia maritima
Length = 126
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 attcgcttggtgcaggtcgggaac 36
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900008.1/99-224 264402:Capsella grandiflora
Length = 126
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 attcgcttggtgcaggtcgggaac 36
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 109 gccttgcatcaactgaatcggag 131
|||||||||||||||||||||||
Sbjct: 92 gccttgcatcaactgaatcggag 114
>RF00677;MIR168;AB020744.1/40369-40244 3702:Arabidopsis thaliana
(thale cress)
Length = 126
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 attcgcttggtgcaggtcgggaac 36
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
>RF00677;MIR168;AM900024.1/109-239 72657:Aethionema grandiflorum
Length = 131
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 13 attcgcttggtgcaggtcgggaac 36
||||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcgggaac 40
Score = 44.1 bits (22), Expect = 5e-04
Identities = 25/26 (96%)
Strand = Plus / Plus
Query: 105 tcccgccttgcatcaactgaatcgga 130
|||||| |||||||||||||||||||
Sbjct: 92 tcccgctttgcatcaactgaatcgga 117
>RF00677;MIR168;BT069329.1/34-135 4577:Zea mays
Length = 102
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 103 gatcccgccttgcatcaactgaatcggagacggcg 137
|||||||||||||| ||| |||||||||| |||||
Sbjct: 62 gatcccgccttgcaccaagtgaatcggagccggcg 96
>RF00677;MIR168;AP004886.3/116669-116566 39947:Oryza sativa Japonica
Group
Length = 104
Score = 46.1 bits (23), Expect = 1e-04
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 103 gatcccgccttgcatcaactgaatcggagacggcg 137
|||||||||||||| ||| |||||||||| |||||
Sbjct: 64 gatcccgccttgcaccaagtgaatcggagccggcg 98
