miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00452;mir-172;AM481129.2/11694-11833 29760:Vitis vinifera
Length = 140
Score = 268 bits (135), Expect = 2e-71
Identities = 135/135 (100%)
Strand = Plus / Minus
Query: 1 tattgccgctgcagcatcatcaagattcccacatcaaagagccatcggagtgtaggaagg 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 138 tattgccgctgcagcatcatcaagattcccacatcaaagagccatcggagtgtaggaagg 79
Query: 61 gaccacaaaagtcaccatcaccaccacgcactgagtctcaatacttgtgaatcttgatga 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 78 gaccacaaaagtcaccatcaccaccacgcactgagtctcaatacttgtgaatcttgatga 19
Query: 121 tgctccatccgcaaa 135
|||||||||||||||
Sbjct: 18 tgctccatccgcaaa 4
>RF00452;mir-172;AARH01004394.1/257332-257189 3694:Populus
trichocarpa
Length = 144
Score = 69.9 bits (35), Expect = 8e-12
Identities = 112/133 (84%), Gaps = 6/133 (4%)
Strand = Plus / Minus
Query: 1 tattgccgctgcagcatcatcaagattcccacatcaaagagccatcggagtg-taggaag 59
||||||||||||||||||||||||||||||| |||||| || || ||| || | |||
Sbjct: 142 tattgccgctgcagcatcatcaagattcccaattcaaagggctattggattgaaaaaaag 83
Query: 60 ggacca-caaaagtcaccatcaccaccacgcactgagtctcaata---cttgtgaatctt 115
|||||| |||||| |||||||| |||||| |||| || | |||| ||||||||||||
Sbjct: 82 ggaccaccaaaagccaccatcatcaccacacact-agccctaataaagcttgtgaatctt 24
Query: 116 gatgatgctccat 128
|||||||||||||
Sbjct: 23 gatgatgctccat 11
>RF00452;mir-172;AASG02005670.1/14724-14879 3988:Ricinus communis
(castor bean)
Length = 156
Score = 69.9 bits (35), Expect = 8e-12
Identities = 38/39 (97%)
Strand = Plus / Minus
Query: 1 tattgccgctgcagcatcatcaagattcccacatcaaag 39
||||||||||||||||||||||||||||||| |||||||
Sbjct: 154 tattgccgctgcagcatcatcaagattcccatatcaaag 116
Score = 54.0 bits (27), Expect = 5e-07
Identities = 30/31 (96%)
Strand = Plus / Minus
Query: 105 ttgtgaatcttgatgatgctccatccgcaaa 135
||||||||||||||||||||||||| |||||
Sbjct: 34 ttgtgaatcttgatgatgctccatcagcaaa 4
>RF00452;mir-172;ABIM01001078.1/716-916 3649:Carica papaya (papaya)
Length = 201
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 105 ttgtgaatcttgatgatgctccatccgcaaa 135
|||||||||||||||||||||||||||||||
Sbjct: 34 ttgtgaatcttgatgatgctccatccgcaaa 4
Score = 61.9 bits (31), Expect = 2e-09
Identities = 31/31 (100%)
Strand = Plus / Minus
Query: 1 tattgccgctgcagcatcatcaagattccca 31
|||||||||||||||||||||||||||||||
Sbjct: 199 tattgccgctgcagcatcatcaagattccca 169
>RF00452;mir-172;EU549232.1/232-344 3702:Arabidopsis thaliana (thale
cress)
Length = 113
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 2 attgccgctgcagcatcatcaagattc 28
|||||||||||||||||||||||||||
Sbjct: 110 attgccgctgcagcatcatcaagattc 84
>RF00452;mir-172;AY728437.1/1-132 3694:Populus trichocarpa
Length = 132
Score = 54.0 bits (27), Expect = 5e-07
Identities = 27/27 (100%)
Strand = Plus / Minus
Query: 5 gccgctgcagcatcatcaagattccca 31
|||||||||||||||||||||||||||
Sbjct: 132 gccgctgcagcatcatcaagattccca 106
>RF00452;mir-172;AARH01003915.1/155600-155740 3694:Populus
trichocarpa
Length = 141
Score = 52.0 bits (26), Expect = 2e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 106 tgtgaatcttgatgatgctccatccgcaaa 135
|||||||||||||||||||||| |||||||
Sbjct: 33 tgtgaatcttgatgatgctccacccgcaaa 4
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 tattgccgctgcagcatcatcaagattc 28
|||||||| |||||||||||||||||||
Sbjct: 139 tattgccgatgcagcatcatcaagattc 112
>RF00452;mir-172;BABK01012763.1/1927-2053 34305:Lotus japonicus
Length = 127
Score = 52.0 bits (26), Expect = 2e-06
Identities = 32/34 (94%)
Strand = Plus / Minus
Query: 9 ctgcagcatcatcaagattcccacatcaaagagc 42
|||||||||||||||||||| || ||||||||||
Sbjct: 122 ctgcagcatcatcaagattctcaaatcaaagagc 89
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 104 cttgtgaatcttgatgatgctcca 127
||||||||||||||||||||||||
Sbjct: 35 cttgtgaatcttgatgatgctcca 12
>RF00452;mir-172;AARH01003860.1/86743-86610 3694:Populus trichocarpa
Length = 134
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 3 ttgccgctgcagcatcatcaagattccca 31
|||||| ||||||||||||||||||||||
Sbjct: 130 ttgccgatgcagcatcatcaagattccca 102
>RF00452;mir-172;AARH01000428.1/33766-33584 3694:Populus trichocarpa
Length = 183
Score = 50.1 bits (25), Expect = 8e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 3 ttgccgctgcagcatcatcaagattccca 31
|||||| ||||||||||||||||||||||
Sbjct: 179 ttgccgatgcagcatcatcaagattccca 151
>RF00452;mir-172;AC182714.2/88903-88742 3694:Populus trichocarpa
Length = 162
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 tattgccgctgcagcatcatcaagattc 28
|||||||| |||||||||||||||||||
Sbjct: 160 tattgccgatgcagcatcatcaagattc 133
>RF00452;mir-172;CAAP02003282.1/14594-14705 29760:Vitis vinifera
Length = 112
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 tattgccgctgcagcatcatcaagattc 28
|||||||| |||||||||||||||||||
Sbjct: 110 tattgccgatgcagcatcatcaagattc 83
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 106 tgtgaatcttgatgatgctccatccgcaaa 135
||||||||||||||||||| ||| ||||||
Sbjct: 33 tgtgaatcttgatgatgctacatgcgcaaa 4
>RF00452;mir-172;AM457961.2/1662-1782 29760:Vitis vinifera
Length = 121
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 tattgccgctgcagcatcatcaagattc 28
|||||||| |||||||||||||||||||
Sbjct: 119 tattgccgatgcagcatcatcaagattc 92
>RF00452;mir-172;CAAP02000586.1/29172-29291 29760:Vitis vinifera
Length = 120
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 1 tattgccgctgcagcatcatcaagattc 28
|||||||| |||||||||||||||||||
Sbjct: 118 tattgccgatgcagcatcatcaagattc 91
>RF00452;mir-172;AC165172.2/39243-39397 4577:Zea mays
Length = 155
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 10 tgcagcatcatcaagattcccaca 33
||||||||||||||||||||||||
Sbjct: 144 tgcagcatcatcaagattcccaca 121
>RF00452;mir-172;EU974220.1/371-523 4577:Zea mays
Length = 153
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 10 tgcagcatcatcaagattcccaca 33
||||||||||||||||||||||||
Sbjct: 142 tgcagcatcatcaagattcccaca 119
>RF00452;mir-172;ABXC01002369.1/66790-66601 4558:Sorghum bicolor
(sorghum)
Length = 190
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 10 tgcagcatcatcaagattcccaca 33
||||||||||||||||||||||||
Sbjct: 179 tgcagcatcatcaagattcccaca 156
>RF00452;mir-172;AP003298.3/17210-16973 39947:Oryza sativa Japonica
Group
Length = 238
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 10 tgcagcatcatcaagattcccaca 33
||||||||||||||||||||||||
Sbjct: 227 tgcagcatcatcaagattcccaca 204
>RF00452;mir-172;FM163855.1/191-306 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 2 attgccgctgcagcatcatcaagattc 28
||||||| |||||||||||||||||||
Sbjct: 113 attgccgatgcagcatcatcaagattc 87
>RF00452;mir-172;EU549250.1/242-366 3702:Arabidopsis thaliana (thale
cress)
Length = 125
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 10 tgcagcatcatcaagattcccac 32
|||||||||||||||||||||||
Sbjct: 114 tgcagcatcatcaagattcccac 92
>RF00452;mir-172;EU549227.1/243-121 3702:Arabidopsis thaliana (thale
cress)
Length = 123
Score = 46.1 bits (23), Expect = 1e-04
Identities = 23/23 (100%)
Strand = Plus / Minus
Query: 105 ttgtgaatcttgatgatgctcca 127
|||||||||||||||||||||||
Sbjct: 34 ttgtgaatcttgatgatgctcca 12
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 2 attgccgctgcagcatcatcaagattc 28
||||| |||||||||||||||||||||
Sbjct: 120 attgcagctgcagcatcatcaagattc 94
>RF00452;mir-172;CAAP02002749.1/38930-38796 29760:Vitis vinifera
Length = 135
Score = 46.1 bits (23), Expect = 1e-04
Identities = 29/31 (93%)
Strand = Plus / Minus
Query: 105 ttgtgaatcttgatgatgctccatccgcaaa 135
||||||||||| |||||||| ||||||||||
Sbjct: 34 ttgtgaatcttcatgatgctgcatccgcaaa 4
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 10 tgcagcatcatcaagattccca 31
||||||||||||||||||||||
Sbjct: 124 tgcagcatcatcaagattccca 103
>RF00452;mir-172;ABIM01015449.1/13104-12974 3649:Carica papaya
(papaya)
Length = 131
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 10 tgcagcatcatcaagattccca 31
||||||||||||||||||||||
Sbjct: 120 tgcagcatcatcaagattccca 99
>RF00452;mir-172;AC189648.2/24074-23978 51351:Brassica rapa subsp.
pekinensis
Length = 97
Score = 44.1 bits (22), Expect = 5e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 10 tgcagcatcatcaagattccca 31
||||||||||||||||||||||
Sbjct: 86 tgcagcatcatcaagattccca 65
>RF00452;mir-172;AASG02011039.1/5310-5468 3988:Ricinus communis
(castor bean)
Length = 159
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 106 tgtgaatcttgatgatgctccatccgcaaa 135
||||||||||||||||||| || |||||||
Sbjct: 33 tgtgaatcttgatgatgctacacccgcaaa 4
