miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00643;MIR171_1;CAAP02000614.1/91102-91000 29760:Vitis vinifera
Length = 103
Score = 204 bits (103), Expect = 2e-52
Identities = 103/103 (100%)
Strand = Plus / Plus
Query: 4 tatggggggaggtattggcgtgcctcaatttaaagacatggttagatgaagagatattag 63
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tatggggggaggtattggcgtgcctcaatttaaagacatggttagatgaagagatattag 60
Query: 64 ccatgtgatttgattgagccgcgtcaatatctccttttgcacc 106
|||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 ccatgtgatttgattgagccgcgtcaatatctccttttgcacc 103
>RF00643;MIR171_1;AASG02005726.1/12385-12489 3988:Ricinus communis
(castor bean)
Length = 105
Score = 69.9 bits (35), Expect = 6e-12
Identities = 38/39 (97%)
Strand = Plus / Plus
Query: 61 tagccatgtgatttgattgagccgcgtcaatatctcctt 99
||||||||| |||||||||||||||||||||||||||||
Sbjct: 60 tagccatgtaatttgattgagccgcgtcaatatctcctt 98
>RF00643;MIR171_1;ABIM01016024.1/6261-6158 3649:Carica papaya
(papaya)
Length = 104
Score = 58.0 bits (29), Expect = 2e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 59 attagccatgtgatttgattgagccgcgtcaatatctcctt 99
||||||||||| | ||||||||||||||||||||||||||
Sbjct: 57 attagccatgttttctgattgagccgcgtcaatatctcctt 97
>RF00643;MIR171_1;AC157488.1/72896-73001 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 54.0 bits (27), Expect = 4e-07
Identities = 36/39 (92%)
Strand = Plus / Plus
Query: 57 atattagccatgtgatttgattgagccgcgtcaatatct 95
|||| |||||||| ||||||||||||||||||||||||
Sbjct: 57 atatcagccatgtagtttgattgagccgcgtcaatatct 95
>RF00643;MIR171_1;BABK01034163.1/917-1020 34305:Lotus japonicus
Length = 104
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 72 tttgattgagccgcgtcaatatct 95
||||||||||||||||||||||||
Sbjct: 70 tttgattgagccgcgtcaatatct 93
>RF00643;MIR171_1;EU950482.1/151-254 4577:Zea mays
Length = 104
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 62 agccatgtgatttgattgagccgcgtcaatatctcc 97
|||||||| || |||||||||||||||||||||||
Sbjct: 60 agccatgttcttggattgagccgcgtcaatatctcc 95
>RF00643;MIR171_1;ABXC01000173.1/152883-152783 4558:Sorghum
bicolor (sorghum)
Length = 101
Score = 48.1 bits (24), Expect = 2e-05
Identities = 33/36 (91%)
Strand = Plus / Plus
Query: 62 agccatgtgatttgattgagccgcgtcaatatctcc 97
|||||||| || |||||||||||||||||||||||
Sbjct: 57 agccatgttcttggattgagccgcgtcaatatctcc 92
>RF00643;MIR171_1;AC147962.1/85803-85682 39947:Oryza sativa Japonica
Group
Length = 122
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 75 gattgagccgcgtcaatatctc 96
||||||||||||||||||||||
Sbjct: 91 gattgagccgcgtcaatatctc 112
