miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 365 bits (184), Expect = e-100
Identities = 191/192 (99%), Gaps = 1/192 (0%)
Strand = Plus / Plus
Query: 2 ggttttggagtggagctccttgaagtccaatagagggtcttactgggtagattgagctgc 61
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggttttggagtggagctccttgaagtccaatagagggtcttactgggtagattgagctgc 60
Query: 62 tgacttatggatcccacagccctatcccgtcaat-gggggcattggataggcttgtggct 120
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 61 tgacttatggatcccacagccctatcccgtcaatggggggcattggataggcttgtggct 120
Query: 121 tgcatatctcaggagctgcattatccaagtttagatccttgtttggattgaagggagctc 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgcatatctcaggagctgcattatccaagtttagatccttgtttggattgaagggagctc 180
Query: 181 tacacctctctc 192
||||||||||||
Sbjct: 181 tacacctctctc 192
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 149 bits (75), Expect = 2e-35
Identities = 162/187 (86%), Gaps = 3/187 (1%)
Strand = Plus / Plus
Query: 8 ggagtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgactt 67
|||||||||||||||||||||||||||||| |||| |||||||||||||||||||| |
Sbjct: 7 ggagtggagctccttgaagtccaatagaggatcttgatgggtagattgagctgctgagct 66
Query: 68 atggatcccacagccctat-cccgtcaatgggggcattggataggcttgtggcttgcata 126
||||||||||||||||||| | || ||||||||||||||||||||||||
Sbjct: 67 atggatcccacagccctataagcagagattataattttggataggcttgtggcttgcata 126
Query: 127 tctcaggagctgcattatccaagt-ttagatccttgtttggattgaagggagctctacac 185
||||||||||| ||||| || || ||||||||||||||||||||||||||||||||||
Sbjct: 127 tctcaggagcttcatta-ccttgtattagatccttgtttggattgaagggagctctacat 185
Query: 186 ctctctc 192
|||||||
Sbjct: 186 ctctctc 192
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 99.6 bits (50), Expect = 1e-20
Identities = 76/82 (92%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 108 taggcttgtggcttgcatatctcaggagctgcattatcc-aagtttagatccttgtttgg 166
|||||||| || |||||||||||||||||||||||| || ||| ||| ||||||||||||
Sbjct: 108 taggcttgcggtttgcatatctcaggagctgcattaccctaagctta-atccttgtttgg 166
Query: 167 attgaagggagctctacacctc 188
||||||||||||||||||||||
Sbjct: 167 attgaagggagctctacacctc 188
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 91.7 bits (46), Expect = 3e-18
Identities = 141/170 (82%), Gaps = 7/170 (4%)
Strand = Plus / Plus
Query: 14 gagctccttgaagtccaatagagggtcttactgggtagattgagctgctgacttatggat 73
|||||||||||||||||||||| | || | |||||||||| |||||||||| |||| ||
Sbjct: 1 gagctccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaat 60
Query: 74 cccacagccctatc-ccgtcaatgggggca-ttggataggcttgtggcttgcatatctca 131
|||||||||||||| || ||| | || || ||| ||| || |||||||||||||||
Sbjct: 61 cccacagccctatcaccatca-----gtcattttgatgggcctgcggcttgcatatctca 115
Query: 132 ggagctgcattatccaagtttagatccttgtttggattgaagggagctct 181
|||||| |||| | || ||||||| || ||||||||||||||||||||
Sbjct: 116 ggagctttattacctaatgttagatctttttttggattgaagggagctct 165
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 87.7 bits (44), Expect = 5e-17
Identities = 62/68 (91%)
Strand = Plus / Plus
Query: 8 ggagtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgactt 67
|||||||||||||||||||||||||||||| |||| ||||||||||| ||||||| | |
Sbjct: 7 ggagtggagctccttgaagtccaatagaggttcttgctgggtagattaagctgctaagct 66
Query: 68 atggatcc 75
||||||||
Sbjct: 67 atggatcc 74
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 87.7 bits (44), Expect = 5e-17
Identities = 71/80 (88%)
Strand = Plus / Plus
Query: 8 ggagtggagctccttgaagtccaatagagggtcttactgggtagattgagctgctgactt 67
|||||||||||||||||||||||| ||| | ||| || || ||||||||||||||||| |
Sbjct: 7 ggagtggagctccttgaagtccaacagaagatctaacaggttagattgagctgctgacct 66
Query: 68 atggatcccacagccctatc 87
|||||| || ||||||||||
Sbjct: 67 atggattcctcagccctatc 86
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 162 tttggattgaagggagctctaca 184
|||||||||||||||||||||||
Sbjct: 168 tttggattgaagggagctctaca 190
>RF00638;MIR159;AY551213.1/14-203 4530:Oryza sativa (rice)
Length = 190
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 163 ttggattgaagggagctctacacctctctc 192
||||||||||||||||||||||||||||||
Sbjct: 159 ttggattgaagggagctctacacctctctc 188
>RF00638;MIR159;AP009362.1/69443-69635 4081:Solanum lycopersicum
Length = 193
Score = 50.1 bits (25), Expect = 1e-05
Identities = 34/37 (91%)
Strand = Plus / Plus
Query: 106 gataggcttgtggcttgcatatctcaggagctgcatt 142
|||||| |||||| |||||||| ||||||||||||||
Sbjct: 106 gataggtttgtggtttgcatatatcaggagctgcatt 142
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 162 tttggattgaagggagctctaca 184
|||||||||||||||||||||||
Sbjct: 172 tttggattgaagggagctctaca 194
>RF00638;MIR159;EU869143.1/162-369 39946:Oryza sativa Indica Group
Length = 208
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 163 ttggattgaagggagctctacacctctctc 192
|||||||||||||||||| ||| |||||||
Sbjct: 177 ttggattgaagggagctccacatctctctc 206
>RF00638;MIR159;AP008207.1/6555244-6555046 39947:Oryza sativa
Japonica Group
Length = 199
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 163 ttggattgaagggagctctacacctctctc 192
|||||||||||||||||| ||| |||||||
Sbjct: 168 ttggattgaagggagctccacatctctctc 197
