miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;CAAP02007000.1/8870-9063 29760:Vitis vinifera
Length = 194
Score = 333 bits (168), Expect = 5e-91
Identities = 186/192 (96%)
Strand = Plus / Plus
Query: 2 ggttttggagtggccttccttgaagtccaatagagggtcttactgggtagattcatctgc 61
||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||||
Sbjct: 1 ggttttggagtggagctccttgaagtccaatagagggtcttactgggtagattgagctgc 60
Query: 62 tgacttatggatcccacagccctatcccgtcaatggggggcattggataggcttgtggct 121
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 tgacttatggatcccacagccctatcccgtcaatggggggcattggataggcttgtggct 120
Query: 122 tgcatctctcaggagctgcattatccaagtttagatccttgtttggattgaagggagctc 181
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 121 tgcatatctcaggagctgcattatccaagtttagatccttgtttggattgaagggagctc 180
Query: 182 tacacctctctc 193
||||||||||||
Sbjct: 181 tacacctctctc 192
>RF00638;MIR159;AASG02012489.1/1166-1359 3988:Ricinus communis
(castor bean)
Length = 194
Score = 97.6 bits (49), Expect = 5e-20
Identities = 147/177 (83%), Gaps = 2/177 (1%)
Strand = Plus / Plus
Query: 18 tccttgaagtccaatagagggtcttactgggtagattcatctgctgacttatggatccca 77
|||||||||||||||||||| |||| |||||||||| | ||||||| |||||||||||
Sbjct: 17 tccttgaagtccaatagaggatcttgatgggtagattgagctgctgagctatggatccca 76
Query: 78 cagccctatcccgtcaatggggggcattggataggcttgtggcttgcatctctcaggagc 137
||||||||| | ||||||||||||||||||||||| ||||||||||
Sbjct: 77 cagccctataagcagagattataattttggataggcttgtggcttgcatatctcaggagc 136
Query: 138 tgcattatccaagt-ttagatccttgtttggattgaagggagctctacacctctctc 193
| ||||| || || |||||||||||||||||||||||||||||||||| |||||||
Sbjct: 137 ttcatta-ccttgtattagatccttgtttggattgaagggagctctacatctctctc 192
>RF00638;MIR159;ABIM01001657.1/35314-35507 3649:Carica papaya
(papaya)
Length = 194
Score = 91.7 bits (46), Expect = 3e-18
Identities = 75/82 (91%), Gaps = 2/82 (2%)
Strand = Plus / Plus
Query: 109 taggcttgtggcttgcatctctcaggagctgcattatcc-aagtttagatccttgtttgg 167
|||||||| || |||||| ||||||||||||||||| || ||| ||| ||||||||||||
Sbjct: 108 taggcttgcggtttgcatatctcaggagctgcattaccctaagctta-atccttgtttgg 166
Query: 168 attgaagggagctctacacctc 189
||||||||||||||||||||||
Sbjct: 167 attgaagggagctctacacctc 188
>RF00638;MIR159;AY728395.1/6-170 3694:Populus trichocarpa
Length = 165
Score = 60.0 bits (30), Expect = 1e-08
Identities = 60/70 (85%)
Strand = Plus / Plus
Query: 18 tccttgaagtccaatagagggtcttactgggtagattcatctgctgacttatggatccca 77
|||||||||||||||||| | || | |||||||||| | ||||||| |||| ||||||
Sbjct: 5 tccttgaagtccaatagaagctcctgctgggtagatcgagctgctgagctatgaatccca 64
Query: 78 cagccctatc 87
||||||||||
Sbjct: 65 cagccctatc 74
Score = 58.0 bits (29), Expect = 5e-08
Identities = 56/65 (86%)
Strand = Plus / Plus
Query: 118 ggcttgcatctctcaggagctgcattatccaagtttagatccttgtttggattgaaggga 177
||||||||| ||||||||||| |||| | || ||||||| || |||||||||||||||
Sbjct: 101 ggcttgcatatctcaggagctttattacctaatgttagatctttttttggattgaaggga 160
Query: 178 gctct 182
|||||
Sbjct: 161 gctct 165
>RF00638;MIR159;AARH01017144.1/4716-4901 3694:Populus trichocarpa
Length = 186
Score = 60.0 bits (30), Expect = 1e-08
Identities = 51/58 (87%)
Strand = Plus / Plus
Query: 18 tccttgaagtccaatagagggtcttactgggtagattcatctgctgacttatggatcc 75
|||||||||||||||||||| |||| ||||||||||| | ||||| | |||||||||
Sbjct: 17 tccttgaagtccaatagaggttcttgctgggtagattaagctgctaagctatggatcc 74
Score = 60.0 bits (30), Expect = 1e-08
Identities = 66/78 (84%)
Strand = Plus / Plus
Query: 106 ggataggcttgtggcttgcatctctcaggagctgcattatccaagtttagatccttgttt 165
||||||| ||| ||||||||| ||||||||||| ||| | || |||||||| | |||
Sbjct: 97 ggataggtttgcggcttgcatatctcaggagctttattgcctaatgttagatcccttttt 156
Query: 166 ggattgaagggagctcta 183
||||||||||||||||||
Sbjct: 157 ggattgaagggagctcta 174
>RF00638;MIR159;AY551213.1/14-203 4530:Oryza sativa (rice)
Length = 190
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 164 ttggattgaagggagctctacacctctctc 193
||||||||||||||||||||||||||||||
Sbjct: 159 ttggattgaagggagctctacacctctctc 188
>RF00638;MIR159;AC235792.1/25881-25682 4081:Solanum lycopersicum
Length = 200
Score = 52.0 bits (26), Expect = 3e-06
Identities = 59/70 (84%)
Strand = Plus / Plus
Query: 18 tccttgaagtccaatagagggtcttactgggtagattcatctgctgacttatggatccca 77
|||||||||||||| ||| | ||| || || |||||| | |||||||| ||||||| ||
Sbjct: 17 tccttgaagtccaacagaagatctaacaggttagattgagctgctgacctatggattcct 76
Query: 78 cagccctatc 87
||||||||||
Sbjct: 77 cagccctatc 86
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctctaca 185
|||||||||||||||||||||||
Sbjct: 168 tttggattgaagggagctctaca 190
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 163 tttggattgaagggagctctaca 185
|||||||||||||||||||||||
Sbjct: 172 tttggattgaagggagctctaca 194
>RF00638;MIR159;EU869143.1/162-369 39946:Oryza sativa Indica Group
Length = 208
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 164 ttggattgaagggagctctacacctctctc 193
|||||||||||||||||| ||| |||||||
Sbjct: 177 ttggattgaagggagctccacatctctctc 206
>RF00638;MIR159;AP008207.1/6555244-6555046 39947:Oryza sativa
Japonica Group
Length = 199
Score = 44.1 bits (22), Expect = 7e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 164 ttggattgaagggagctctacacctctctc 193
|||||||||||||||||| ||| |||||||
Sbjct: 168 ttggattgaagggagctccacatctctctc 197
