miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF01917;MIR2587;AC149547.26/78413-78517 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 153 bits (77), Expect = 5e-37
Identities = 92/97 (94%)
Strand = Plus / Plus
Query: 4 gtggtgtcatggtcattgttgaccattcatatgaaccctgcaattgcattgcagcttgtg 63
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||
Sbjct: 3 gtggtgtcatggtcattgttgaccgttcatatgaaccctgcaatagcattgcagcttgtg 62
Query: 64 tggggttcatataatggtcaacagagacccttgacat 100
|||||||||||||| |||||||| ||||| |||||||
Sbjct: 63 tggggttcatataacggtcaacatagaccattgacat 99
>RF01917;MIR2587;AC143338.29/31241-31136 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 147 bits (74), Expect = 3e-35
Identities = 96/102 (94%), Gaps = 1/102 (0%)
Strand = Plus / Plus
Query: 4 gtggtgtcatggtcattgttgaccattc-atatgaaccctgcaattgcattgcagcttgt 62
||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct: 3 gtggtgtcatggtcattgttgactgttttatatgaaccctgcaattgcattgcagcttgt 62
Query: 63 gtggggttcatataatggtcaacagagacccttgacatcaaa 104
||||||||||||||| | ||||||||||||||||||||||||
Sbjct: 63 gtggggttcatataacgatcaacagagacccttgacatcaaa 104
>RF01917;MIR2587;CU179920.2/124764-124661 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 137 bits (69), Expect = 3e-32
Identities = 94/101 (93%), Gaps = 1/101 (0%)
Strand = Plus / Plus
Query: 4 gtggtgtcatggtcattgttgaccattcatatgaaccctgcaattgcattgcagcttgtg 63
|||||||||||||||||||||||||||||||||| || | ||||||||||||||||| ||
Sbjct: 3 gtggtgtcatggtcattgttgaccattcatatgacccatacaattgcattgcagcttctg 62
Query: 64 tggggttcatataatggtcaacagagacccttgacatcaaa 104
||||||| |||||||| |||||||||||| |||||||||||
Sbjct: 63 tggggtt-atataatgatcaacagagacctttgacatcaaa 102
>RF01917;MIR2587;AC225475.10/94784-94680 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 123 bits (62), Expect = 5e-28
Identities = 86/94 (91%)
Strand = Plus / Plus
Query: 4 gtggtgtcatggtcattgttgaccattcatatgaaccctgcaattgcattgcagcttgtg 63
|||||||||||||||||||||||||||||||||||| ||||||| |||||| ||||| |
Sbjct: 3 gtggtgtcatggtcattgttgaccattcatatgaactctgcaatagcattgaagcttacg 62
Query: 64 tggggttcatataatggtcaacagagacccttga 97
|||||||||||||| || ||||||||||| ||||
Sbjct: 63 tggggttcatataacggccaacagagaccattga 96
>RF01917;MIR2587;AC149580.19/82987-83091 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 123 bits (62), Expect = 5e-28
Identities = 92/102 (90%)
Strand = Plus / Plus
Query: 3 agtggtgtcatggtcattgttgaccattcatatgaaccctgcaattgcattgcagcttgt 62
|||||||||||||||||| ||||| ||| ||||||||||| ||| ||||||| |||||
Sbjct: 2 agtggtgtcatggtcattattgactgttcgtatgaaccctggaataacattgcaacttgt 61
Query: 63 gtggggttcatataatggtcaacagagacccttgacatcaaa 104
||||||||||||||| |||||||||| |||||||||||||||
Sbjct: 62 gtggggttcatataacggtcaacagaaacccttgacatcaaa 103
>RF01917;MIR2587;CU459038.1/12856-12752 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 121 bits (61), Expect = 2e-27
Identities = 91/101 (90%)
Strand = Plus / Plus
Query: 4 gtggtgtcatggtcattgttgaccattcatatgaaccctgcaattgcattgcagcttgtg 63
||||| ||||| || || |||||| ||||||| |||| | |||| |||||||||||||||
Sbjct: 3 gtggtatcatgatctttattgaccgttcatataaaccatacaatagcattgcagcttgtg 62
Query: 64 tggggttcatataatggtcaacagagacccttgacatcaaa 104
|||||||||||||||||||||||||||| ||||||||||||
Sbjct: 63 tggggttcatataatggtcaacagagactcttgacatcaaa 103
>RF01917;MIR2587;CU651599.5/108636-108740 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 115 bits (58), Expect = 1e-25
Identities = 88/98 (89%)
Strand = Plus / Plus
Query: 7 gtgtcatggtcattgttgaccattcatatgaaccctgcaattgcattgcagcttgtgtgg 66
||||||||||||||||||||| |||||| || |||||||||||||| ||||||| || ||
Sbjct: 6 gtgtcatggtcattgttgaccgttcatacgacccctgcaattgcatagcagcttatgcgg 65
Query: 67 ggttcatataatggtcaacagagacccttgacatcaaa 104
|| | |||||| |||||||||||||||||||||||||
Sbjct: 66 gggttatataacagtcaacagagacccttgacatcaaa 103
>RF01917;MIR2587;AC136472.40/14138-14242 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 113 bits (57), Expect = 5e-25
Identities = 90/101 (89%)
Strand = Plus / Plus
Query: 4 gtggtgtcatggtcattgttgaccattcatatgaaccctgcaattgcattgcagcttgtg 63
|||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||
Sbjct: 3 gtggtgtcatggtcattgttgaccgttcatatgaaccctgcaataatattgcagcttgtg 62
Query: 64 tggggttcatataatggtcaacagagacccttgacatcaaa 104
|| |||| |||||| ||||| ||| ||| |||||||||||
Sbjct: 63 tgaggttgatataacagtcaatagaaacctttgacatcaaa 103
>RF01917;MIR2587;AC122728.32/33601-33710 3880:Medicago truncatula
(barrel medic)
Length = 110
Score = 113 bits (57), Expect = 5e-25
Identities = 93/105 (88%), Gaps = 5/105 (4%)
Strand = Plus / Plus
Query: 5 tggtgtcatggtcattgttgaccattcatatgaaccctgcaatt-----gcattgcagct 59
|||||||| |||| |||||||| |||||| ||||||||||||| |||||||||||
Sbjct: 4 tggtgtcacggtcgctgttgaccgttcataggaaccctgcaattcaaatgcattgcagct 63
Query: 60 tgtgtggggttcatataatggtcaacagagacccttgacatcaaa 104
|||||||||||||||||| |||||||| |||||||||||||||||
Sbjct: 64 tgtgtggggttcatataacggtcaacaaagacccttgacatcaaa 108
>RF01917;MIR2587;AC202358.24/41539-41430 3880:Medicago truncatula
(barrel medic)
Length = 110
Score = 113 bits (57), Expect = 5e-25
Identities = 93/105 (88%), Gaps = 5/105 (4%)
Strand = Plus / Plus
Query: 5 tggtgtcatggtcattgttgaccattcatatgaaccctgcaattgca-----ttgcagct 59
|||||||||| ||||||||| || |||||| |||||| |||||||| ||||||||
Sbjct: 4 tggtgtcatgatcattgttggccgttcatagaaaccctacaattgcaatgcattgcagct 63
Query: 60 tgtgtggggttcatataatggtcaacagagacccttgacatcaaa 104
|||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 64 tgtgtggggttcatataacggtcaacagagacccttgacatcaaa 108
>RF01917;MIR2587;AC144765.19/125997-126101 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 105 bits (53), Expect = 1e-22
Identities = 89/101 (88%)
Strand = Plus / Plus
Query: 4 gtggtgtcatggtcattgttgaccattcatatgaaccctgcaattgcattgcagcttgtg 63
||||||||||| |||||||||||| ||||||| | |||||||||||| ||||||||| ||
Sbjct: 3 gtggtgtcatgatcattgttgaccgttcatataacccctgcaattgctttgcagcttatg 62
Query: 64 tggggttcatataatggtcaacagagacccttgacatcaaa 104
|| | ||||||||||||||||||||| |||||||||||
Sbjct: 63 caagggttatataatggtcaacagagacctttgacatcaaa 103
>RF01917;MIR2587;AC160012.1/20945-21049 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 97.6 bits (49), Expect = 3e-20
Identities = 88/101 (87%)
Strand = Plus / Plus
Query: 4 gtggtgtcatggtcattgttgaccattcatatgaaccctgcaattgcattgcagcttgtg 63
|||||||||||||||| ||||||| |||||| | | ||||||| |||||||||||| ||
Sbjct: 3 gtggtgtcatggtcatcgttgaccgttcatacaaccactgcaatagcattgcagcttatg 62
Query: 64 tggggttcatataatggtcaacagagacccttgacatcaaa 104
||||| | |||| | |||||||||||||| |||||||||||
Sbjct: 63 tgggggttatatgacggtcaacagagacctttgacatcaaa 103
>RF01917;MIR2587;CT954252.6/94986-95090 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 89.7 bits (45), Expect = 7e-18
Identities = 84/97 (86%)
Strand = Plus / Plus
Query: 4 gtggtgtcatggtcattgttgaccattcatatgaaccctgcaattgcattgcagcttgtg 63
|||||||||| |||||||||||| |||||| || | |||||||||||||||||||| ||
Sbjct: 3 gtggtgtcataatcattgttgaccgttcatacgaccactgcaattgcattgcagcttatg 62
Query: 64 tggggttcatataatggtcaacagagacccttgacat 100
||||| | ||||| |||||||| ||| |||||||||
Sbjct: 63 tgggggttgtataacggtcaacaaagatccttgacat 99
>RF01917;MIR2587;AC152349.12/76894-76785 3880:Medicago truncatula
(barrel medic)
Length = 110
Score = 89.7 bits (45), Expect = 7e-18
Identities = 90/105 (85%), Gaps = 5/105 (4%)
Strand = Plus / Plus
Query: 5 tggtgtcatggtcattgttgaccattcatatgaaccctgcaattgca-----ttgcagct 59
||||||||| ||||||||||||| |||||| ||||| |||||||||| ||||| ||
Sbjct: 4 tggtgtcatagtcattgttgaccgttcataggaaccatgcaattgcaatgcattgcaact 63
Query: 60 tgtgtggggttcatataatggtcaacagagacccttgacatcaaa 104
| |||||| ||||||||| ||||||||||||| ||||| ||||||
Sbjct: 64 tttgtgggattcatataacggtcaacagagactcttgatatcaaa 108
>RF01917;MIR2587;AC158210.18/25459-25356 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 89.7 bits (45), Expect = 7e-18
Identities = 88/101 (87%), Gaps = 1/101 (0%)
Strand = Plus / Plus
Query: 4 gtggtgtcatggtcattgttgaccattcatatgaaccctgcaattgcattgcagcttgtg 63
||||||||||||||||||||| || ||||| || |||||||||||||||||||||| ||
Sbjct: 3 gtggtgtcatggtcattgttggtcactcatacgacccctgcaattgcattgcagcttatg 62
Query: 64 tggggttcatataatggtcaacagagacccttgacatcaaa 104
| ||| || ||||| | |||||| ||||||||||||||||
Sbjct: 63 ttggggtc-tataacgatcaacaacgacccttgacatcaaa 102
>RF01917;MIR2587;AC160925.38/40561-40665 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 83.8 bits (42), Expect = 4e-16
Identities = 87/102 (85%)
Strand = Plus / Plus
Query: 3 agtggtgtcatggtcattgttgaccattcatatgaaccctgcaattgcattgcagcttgt 62
|||||||||||||||||||||||| ||||| || |||| ||||||||||||||||| |
Sbjct: 2 agtggtgtcatggtcattgttgactgctcatacgacccctacaattgcattgcagcttat 61
Query: 63 gtggggttcatataatggtcaacagagacccttgacatcaaa 104
| | || || ||||| |||||||| ||| | |||||||||||
Sbjct: 62 gcgtgggtcgtataacggtcaacaaagatcattgacatcaaa 103
>RF01917;MIR2587;CU928860.2/111479-111375 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 79.8 bits (40), Expect = 6e-15
Identities = 79/92 (85%)
Strand = Plus / Plus
Query: 13 tggtcattgttgaccattcatatgaaccctgcaattgcattgcagcttgtgtggggttca 72
|||||||||||| || ||||||| | ||||||||||| ||||||||| || | || | |
Sbjct: 12 tggtcattgttgtccgttcatataacacctgcaattgctttgcagcttatgcgagggtta 71
Query: 73 tataatggtcaacagagacccttgacatcaaa 104
||||| |||||||||||||| |||||||||||
Sbjct: 72 tataacggtcaacagagacctttgacatcaaa 103
>RF01917;MIR2587;CR932965.2/22441-22338 3880:Medicago truncatula
(barrel medic)
Length = 104
Score = 79.8 bits (40), Expect = 6e-15
Identities = 74/84 (88%), Gaps = 1/84 (1%)
Strand = Plus / Plus
Query: 8 tgtcatggtcattgttgaccattcatatgaaccctgcaattgcattgcagcttgtgtggg 67
|||||||||||||||||||| ||||||| | |||||||||||| ||||||||| || |||
Sbjct: 7 tgtcatggtcattgttgaccgttcatat-acccctgcaattgctttgcagcttatgcggg 65
Query: 68 gttcatataatggtcaacagagac 91
| | |||||| |||||||| ||||
Sbjct: 66 ggttatataacggtcaacatagac 89
>RF01917;MIR2587;FP017205.3/75453-75557 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 77.8 bits (39), Expect = 3e-14
Identities = 72/83 (86%)
Strand = Plus / Plus
Query: 4 gtggtgtcatggtcattgttgaccattcatatgaaccctgcaattgcattgcagcttgtg 63
|||||||||||||||||||||||| ||||||| | |||||||||||| ||||| ||| ||
Sbjct: 3 gtggtgtcatggtcattgttgaccgttcatataacccctgcaattgctttgcatcttatg 62
Query: 64 tggggttcatataatggtcaaca 86
||| | |||||| ||||||||
Sbjct: 63 cgggtgttatataacggtcaaca 85
>RF01917;MIR2587;AC152496.15/25421-25528 3880:Medicago truncatula
(barrel medic)
Length = 108
Score = 75.8 bits (38), Expect = 1e-13
Identities = 85/100 (85%), Gaps = 3/100 (3%)
Strand = Plus / Plus
Query: 4 gtggtgtcatggtcattgttgaccattcatatgaaccctgcaattgcattgcagcttgtg 63
|||||||||||||||||||||||| |||||| || || ||||||| | ||||||||| ||
Sbjct: 3 gtggtgtcatggtcattgttgaccgttcatacgacccttgcaattactttgcagcttatg 62
Query: 64 tggggt---tcatataatggtcaacagagacccttgacat 100
||||| | |||||| | |||||||||||| |||||||
Sbjct: 63 tggggggggttatataacgatcaacagagaccattgacat 102
>RF01917;MIR2587;AC147428.6/14904-15009 3880:Medicago truncatula
(barrel medic)
Length = 106
Score = 75.8 bits (38), Expect = 1e-13
Identities = 87/102 (85%), Gaps = 1/102 (0%)
Strand = Plus / Plus
Query: 4 gtggtgtcatggtcattgttg-accattcatatgaaccctgcaattgcattgcagcttgt 62
|||||||||||||||||||| ||| ||||||| | ||| ||||||| ||||||||| |
Sbjct: 3 gtggtgtcatggtcattgttttaccgttcatataacacctacaattgctttgcagcttat 62
Query: 63 gtggggttcatataatggtcaacagagacccttgacatcaaa 104
|||||| | |||||| |||||| | ||||| |||||||||||
Sbjct: 63 gtgggggttatataacggtcaaaacagacctttgacatcaaa 104
>RF01917;MIR2587;AC165275.5/48411-48307 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 71.9 bits (36), Expect = 2e-12
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 5 tggtgtcatggtcattgttgaccattcatatgaaccctgcaattgcattgcagctt 60
||||||||||||||||||||||||||||||| | | ||||||||| |||||||||
Sbjct: 4 tggtgtcatggtcattgttgaccattcatataatcgctgcaattgatttgcagctt 59
>RF01917;MIR2587;AC144619.3/9698-9802 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 61.9 bits (31), Expect = 1e-09
Identities = 82/99 (82%)
Strand = Plus / Plus
Query: 4 gtggtgtcatggtcattgttgaccattcatatgaaccctgcaattgcattgcagcttgtg 63
|||||||||||||| ||||||||| ||||||| |||| || ||||| || |||||| ||
Sbjct: 3 gtggtgtcatggtccttgttgaccgttcatataaaccttgaaattgtttttcagcttatg 62
Query: 64 tggggttcatataatggtcaacagagacccttgacatca 102
|| | |||||||| |||| ||||||| |||||||||
Sbjct: 63 cacgggttatataatgttcaagagagacctttgacatca 101
>RF01917;MIR2587;AC135801.24/66662-66752 3880:Medicago truncatula
(barrel medic)
Length = 91
Score = 50.1 bits (25), Expect = 6e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 4 gtggtgtcatggtcattgttgaccattcatatgaaccctgc 44
|||||||||||||||||||||||| ||||| || ||||||
Sbjct: 3 gtggtgtcatggtcattgttgaccgctcatacgacccctgc 43
Score = 46.1 bits (23), Expect = 9e-05
Identities = 32/35 (91%)
Strand = Plus / Plus
Query: 70 tcatataatggtcaacagagacccttgacatcaaa 104
|||||||| |||||| ||||||| |||||||||||
Sbjct: 55 tcatataacggtcaatagagaccattgacatcaaa 89
>RF01917;MIR2587;AC131248.14/16699-16590 3880:Medicago truncatula
(barrel medic)
Length = 110
Score = 50.1 bits (25), Expect = 6e-06
Identities = 58/68 (85%), Gaps = 2/68 (2%)
Strand = Plus / Plus
Query: 39 ccctgcaattgcattgcagctt--gtgtggggttcatataatggtcaacagagacccttg 96
|||||||||||||||||||||| ||| |||| | ||||| ||| |||||| ||| |||
Sbjct: 41 ccctgcaattgcattgcagcttacgtgggggggttgtataacggtaaacagaaacctttg 100
Query: 97 acatcaaa 104
||||||||
Sbjct: 101 acatcaaa 108
>RF01917;MIR2587;AC126013.12/45355-45251 3880:Medicago truncatula
(barrel medic)
Length = 105
Score = 48.1 bits (24), Expect = 2e-05
Identities = 48/56 (85%)
Strand = Plus / Plus
Query: 5 tggtgtcatggtcattgttgaccattcatatgaaccctgcaattgcattgcagctt 60
||||||||||||||||| ||||| || ||| | ||||| |||||| |||||||||
Sbjct: 4 tggtgtcatggtcattgctgaccgtttgtataatccctgtaattgctttgcagctt 59
>RF01917;MIR2587;CR932039.2/14347-14434 3880:Medicago truncatula
(barrel medic)
Length = 88
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 4 gtggtgtcatggtcattgttgac 26
|||||||||||||||||||||||
Sbjct: 3 gtggtgtcatggtcattgttgac 25
