miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00695;MIR398;AC146941.8/124295-124199 3880:Medicago truncatula
(barrel medic)
Length = 97
Score = 167 bits (84), Expect = 4e-41
Identities = 93/96 (96%)
Strand = Plus / Plus
Query: 12 gatgttctacagggtcgacatgagagcacatgaagctatcatggttgtctatgttatcca 71
||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||
Sbjct: 2 gatgttctacagggtcgacatgagaccacatgaagctatcatatttgtctatgttatcca 61
Query: 72 actcatgtgttctcaggtcgcccctgctgaattttc 107
||||||||||||||||||||||||||||||||||||
Sbjct: 62 actcatgtgttctcaggtcgcccctgctgaattttc 97
>RF00695;MIR398;AM426431.2/9842-9931 29760:Vitis vinifera
Length = 90
Score = 56.0 bits (28), Expect = 1e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 73 ctcatgtgttctcaggtcgcccctgctg 100
||||||||||||||||||||||||||||
Sbjct: 56 ctcatgtgttctcaggtcgcccctgctg 83
>RF00695;MIR398;AARH01000462.1/173558-173473 3694:Populus
trichocarpa
Length = 86
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 74 tcatgtgttctcaggtcgcccctgc 98
|||||||||||||||||||||||||
Sbjct: 53 tcatgtgttctcaggtcgcccctgc 77
>RF00695;MIR398;AASG02014986.1/899-1036 3988:Ricinus communis
(castor bean)
Length = 138
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 74 tcatgtgttctcaggtcgcccctgc 98
|||||||||||||||||||||||||
Sbjct: 105 tcatgtgttctcaggtcgcccctgc 129
>RF00695;MIR398;ABIM01009168.1/9183-9310 3649:Carica papaya (papaya)
Length = 128
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 77 tgtgttctcaggtcgcccctgctg 100
||||||||||||||||||||||||
Sbjct: 98 tgtgttctcaggtcgcccctgctg 121
>RF00695;MIR398;AC189227.2/79561-79445 51351:Brassica rapa subsp.
pekinensis
Length = 117
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 74 tcatgtgttctcaggtcgcccctgctga 101
||||||||||||||||| ||||||||||
Sbjct: 84 tcatgtgttctcaggtcacccctgctga 111
>RF00695;MIR398;EU549631.1/255-370 3702:Arabidopsis thaliana (thale
cress)
Length = 116
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 74 tcatgtgttctcaggtcgcccctgctga 101
||||||||||||||||| ||||||||||
Sbjct: 83 tcatgtgttctcaggtcacccctgctga 110
>RF00695;MIR398;EU549661.1/156-270 3702:Arabidopsis thaliana (thale
cress)
Length = 115
Score = 48.1 bits (24), Expect = 3e-05
Identities = 27/28 (96%)
Strand = Plus / Plus
Query: 74 tcatgtgttctcaggtcgcccctgctga 101
||||||||||||||||| ||||||||||
Sbjct: 82 tcatgtgttctcaggtcacccctgctga 109
>RF00695;MIR398;CU223654.1/49-129 80863:Populus tremula x Populus
alba
Length = 81
Score = 48.1 bits (24), Expect = 3e-05
Identities = 24/24 (100%)
Strand = Plus / Plus
Query: 75 catgtgttctcaggtcgcccctgc 98
||||||||||||||||||||||||
Sbjct: 49 catgtgttctcaggtcgcccctgc 72
>RF00695;MIR398;AP005783.3/58390-58303 39947:Oryza sativa Japonica
Group
Length = 88
Score = 44.1 bits (22), Expect = 4e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 77 tgtgttctcaggtcgcccctgc 98
||||||||||||||||||||||
Sbjct: 58 tgtgttctcaggtcgcccctgc 79
