miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;ABXC01002411.1/32850-32747 4558:Sorghum bicolor
(sorghum)
Length = 104
Score = 170 bits (86), Expect = 2e-42
Identities = 86/86 (100%)
Strand = Plus / Plus
Query: 1 cgcctcgggctcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcc 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9 cgcctcgggctcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcc 68
Query: 61 cgccttgcaccaagtgaatccgagcc 86
||||||||||||||||||||||||||
Sbjct: 69 cgccttgcaccaagtgaatccgagcc 94
>RF00677;MIR168;BT069329.1/34-135 4577:Zea mays
Length = 102
Score = 101 bits (51), Expect = 1e-21
Identities = 78/86 (90%), Gaps = 2/86 (2%)
Strand = Plus / Plus
Query: 1 cgcctcgggctcgcttggtgcagatcgggacctgccgccgtgctcggacgggacagatcc 60
|||||||||||||||||||||||||||||||| |||||| | | |||||||| |||||
Sbjct: 9 cgcctcgggctcgcttggtgcagatcgggacccgccgcccgg--ccgacgggacggatcc 66
Query: 61 cgccttgcaccaagtgaatccgagcc 86
|||||||||||||||||||| |||||
Sbjct: 67 cgccttgcaccaagtgaatcggagcc 92
>RF00677;MIR168;AP004886.3/116669-116566 39947:Oryza sativa
Japonica Group
Length = 104
Score = 77.8 bits (39), Expect = 2e-14
Identities = 77/87 (88%), Gaps = 2/87 (2%)
Strand = Plus / Plus
Query: 1 cgcctcgggctcgcttggtgcagatcgggacctgccgccg-tgctcggacgggacagatc 59
|||||||||||||||||||||||||||||||| ||||||| ||| | ||| | ||||
Sbjct: 9 cgcctcgggctcgcttggtgcagatcgggacccgccgccgccgct-gccggggccggatc 67
Query: 60 ccgccttgcaccaagtgaatccgagcc 86
||||||||||||||||||||| |||||
Sbjct: 68 ccgccttgcaccaagtgaatcggagcc 94
>RF00677;MIR168;AM900001.1/83-191 72657:Aethionema grandiflorum
Length = 109
Score = 50.1 bits (25), Expect = 5e-06
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 54 cagatcccgccttgcaccaagtgaatccgagcc 86
|||||||||||||||| ||| ||||||||||||
Sbjct: 67 cagatcccgccttgcatcaactgaatccgagcc 99
