miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00638;MIR159;ABXC01001787.1/21430-21187 4558:Sorghum bicolor
(sorghum)
Length = 244
Score = 452 bits (228), Expect = e-126
Identities = 240/244 (98%)
Strand = Plus / Plus
Query: 10 ggattcgaagcggagctcctatcattccaatgaagggcccttttcatgggtggttccgct 69
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggattcgaagcgaagctcctatcattccaatgaagggcccttttcatgggtggttccgct 60
Query: 70 gctcgttcatggttcccactatcctatctcatcatgtatctgtgtatgtactctagaggg 129
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct: 61 gctcgttcatggttcccactatcctatctcatcatgtatgtgtgtatgtactctagaggg 120
Query: 130 ccggagaagagattcatgtggtcgtcagtctttgagataggcttgtgatttgcatgaccg 189
|| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 121 cccgagaagagattcatgtggtcgtcagtctttgagataggcttgtggtttgcatgaccg 180
Query: 190 aggagctgcaccgtccccttgctggccgctctttggattgaagggagctctgcatcctga 249
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 181 aggagctgcaccgtccccttgctggccgctctttggattgaagggagctctgcatcctga 240
Query: 250 tcca 253
||||
Sbjct: 241 tcca 244
>RF00638;MIR159;EU955086.1/295-527 4577:Zea mays
Length = 233
Score = 176 bits (89), Expect = 1e-43
Identities = 95/97 (97%)
Strand = Plus / Plus
Query: 157 gtctttgagataggcttgtgatttgcatgaccgaggagctgcaccgtccccttgctggcc 216
|||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||
Sbjct: 137 gtctttgagataggcttgtggtttgcatgaccgaggagctgcaccgcccccttgctggcc 196
Query: 217 gctctttggattgaagggagctctgcatcctgatcca 253
|||||||||||||||||||||||||||||||||||||
Sbjct: 197 gctctttggattgaagggagctctgcatcctgatcca 233
Score = 103 bits (52), Expect = 1e-21
Identities = 83/92 (90%), Gaps = 1/92 (1%)
Strand = Plus / Plus
Query: 16 gaagcggagctcctatcattccaatgaagggcccttttcatgggt-ggttccgctgctcg 74
||||||||||||||||||||||||||||||| | | | ||| ||||||||||||||
Sbjct: 7 gaagcggagctcctatcattccaatgaagggtcgtaccgaagggccggttccgctgctcg 66
Query: 75 ttcatggttcccactatcctatctcatcatgt 106
||||||||||||||||||||||||||||||||
Sbjct: 67 ttcatggttcccactatcctatctcatcatgt 98
>RF00638;MIR159;EU947090.1/674-895 4577:Zea mays
Length = 222
Score = 91.7 bits (46), Expect = 5e-18
Identities = 77/86 (89%), Gaps = 1/86 (1%)
Strand = Plus / Plus
Query: 161 ttgagataggcttgtgatttgcatgaccgaggagctgcaccgtcccctt-gctggccgct 219
||||||| |||||||| ||||||||||||||||||||| ||||||||| | || |||||
Sbjct: 129 ttgagatgggcttgtggtttgcatgaccgaggagctgcctcgtccccttcgttgaccgct 188
Query: 220 ctttggattgaagggagctctgcatc 245
|||||| ||||||||||||||||||
Sbjct: 189 gtttggagtgaagggagctctgcatc 214
Score = 65.9 bits (33), Expect = 3e-10
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 55 atgggtggttccgctgctcgttcatggttcccactatcctatctcatca 103
||||||||| | ||||||||||||||||||||||| ||| |||||||||
Sbjct: 46 atgggtggtacagctgctcgttcatggttcccactgtcccatctcatca 94
>RF00638;MIR159;EU869041.1/17-203 39947:Oryza sativa Japonica Group
Length = 187
Score = 91.7 bits (46), Expect = 5e-18
Identities = 79/90 (87%)
Strand = Plus / Plus
Query: 163 gagataggcttgtgatttgcatgaccgaggagctgcaccgtccccttgctggccgctctt 222
|||||||||||||| ||||||||||| |||||| | | | | |||||||| || |||||
Sbjct: 97 gagataggcttgtggtttgcatgaccaaggagccgaatcaactccttgctgaccactctt 156
Query: 223 tggattgaagggagctctgcatcctgatcc 252
||||||||||||||||||||||| ||||||
Sbjct: 157 tggattgaagggagctctgcatcttgatcc 186
Score = 54.0 bits (27), Expect = 1e-06
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 67 gctgctcgttcatggttcccactatcctatctcat 101
|||||| |||||||||||||||||| |||||||||
Sbjct: 55 gctgcttgttcatggttcccactattctatctcat 89
>RF00638;MIR159;ABXC01001787.1/15180-14953 4558:Sorghum bicolor
(sorghum)
Length = 228
Score = 85.7 bits (43), Expect = 3e-16
Identities = 74/83 (89%), Gaps = 1/83 (1%)
Strand = Plus / Plus
Query: 161 ttgagataggcttgtgatttgcatgaccgaggagctgcaccgtcccc-ttgctggccgct 219
||||||| ||| |||| |||||||||||||||||||||| ||||||| ||| | |||||
Sbjct: 135 ttgagatgggcctgtggtttgcatgaccgaggagctgcatcgtcccctttgtcgaccgct 194
Query: 220 ctttggattgaagggagctctgc 242
| |||||||||||||||||||||
Sbjct: 195 cgttggattgaagggagctctgc 217
Score = 65.9 bits (33), Expect = 3e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 67 gctgctcgttcatggttcccactatcctatctcatca 103
||||||||||||||||||||||||||| |||||||||
Sbjct: 58 gctgctcgttcatggttcccactatcccatctcatca 94
>RF00638;MIR159;AP008207.1/17678032-17678305 39947:Oryza sativa
Japonica Group
Length = 274
Score = 56.0 bits (28), Expect = 3e-07
Identities = 28/28 (100%)
Strand = Plus / Plus
Query: 218 ctctttggattgaagggagctctgcatc 245
||||||||||||||||||||||||||||
Sbjct: 239 ctctttggattgaagggagctctgcatc 266
>RF00638;MIR159;AC034107.5/26716-26923 3702:Arabidopsis thaliana
(thale cress)
Length = 208
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 219 tctttggattgaagggagctctgcatc 245
|||||||||||||||||||||| ||||
Sbjct: 174 tctttggattgaagggagctcttcatc 200
>RF00638;MIR159;EU548541.1/320-117 3702:Arabidopsis thaliana (thale
cress)
Length = 204
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 219 tctttggattgaagggagctctgcatc 245
|||||||||||||||||||||| ||||
Sbjct: 170 tctttggattgaagggagctctacatc 196
