miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 230 bits (116), Expect = 4e-60
Identities = 125/128 (97%)
Strand = Plus / Plus
Query: 6 tgcaaggggcggtgacaagctagaggcagcaactgcatatcttgcaagaaaattggtttt 65
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 tgcaaggggcggtgacgagctagaggcagcaactgcatatcttgcaagaaaattggtttt 60
Query: 66 tgaaccataccgatcattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctc 125
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 61 cgaaccataccgataattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctc 120
Query: 126 cctttgcc 133
||||||||
Sbjct: 121 cctttgcc 128
>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
Length = 128
Score = 161 bits (81), Expect = 3e-39
Identities = 105/113 (92%)
Strand = Plus / Plus
Query: 21 caagctagaggcagcaactgcatatcttgcaagaaaattggtttttgaaccataccgatc 80
|||||||||| ||||||||||||||||||||||||||| |||||| ||||||||||
Sbjct: 16 caagctagagacagcaactgcatatcttgcaagaaaatcggttttatggccataccgatg 75
Query: 81 attttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 133
||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 76 attttcttgcaagctgtgcagttgttgtctcaagcttgctgcctccctttgcc 128
Score = 52.0 bits (26), Expect = 2e-06
Identities = 41/46 (89%)
Strand = Plus / Minus
Query: 81 attttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 126
||||||||||||| | |||||||| |||||| ||||||| ||||||
Sbjct: 53 attttcttgcaagatatgcagttgctgtctctagcttgccgcctcc 8
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 135 bits (68), Expect = 2e-31
Identities = 104/115 (90%), Gaps = 2/115 (1%)
Strand = Plus / Plus
Query: 21 caagctagaggcagcaactgcatatcttgcaagaaaa--ttggtttttgaaccataccga 78
|||||||||||||||||||||||| |||||||||||| | |||||| | ||||||
Sbjct: 16 caagctagaggcagcaactgcataccttgcaagaaaaaatcggttttgttgacgtaccga 75
Query: 79 tcattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 133
| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 tgattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 130
Score = 44.1 bits (22), Expect = 5e-04
Identities = 37/42 (88%)
Strand = Plus / Minus
Query: 82 ttttcttgcaagttgtgcagttgttgtctcaagcttgctgcc 123
|||||||||||| | |||||||| || ||| |||||||||||
Sbjct: 52 ttttcttgcaaggtatgcagttgctgcctctagcttgctgcc 11
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 93.7 bits (47), Expect = 6e-19
Identities = 50/51 (98%)
Strand = Plus / Plus
Query: 83 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 133
||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 117 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcctccctttgcc 167
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 79.8 bits (40), Expect = 9e-15
Identities = 43/44 (97%)
Strand = Plus / Plus
Query: 83 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 126
||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 115 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcctcc 158
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 77.8 bits (39), Expect = 3e-14
Identities = 48/51 (94%)
Strand = Plus / Plus
Query: 83 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 133
|||||||||||| ||||||||| || |||||||||||||||||||||||||
Sbjct: 123 tttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctccctttgcc 173
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 73.8 bits (37), Expect = 5e-13
Identities = 40/41 (97%)
Strand = Plus / Plus
Query: 83 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcc 123
||||||||||||||||||||||||| |||||||||||||||
Sbjct: 189 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 229
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 71.9 bits (36), Expect = 2e-12
Identities = 51/56 (91%)
Strand = Plus / Plus
Query: 71 cataccgatcattttcttgcaagttgtgcagttgttgtctcaagcttgctgcctcc 126
||||||||| || |||||||||||| |||||||| || ||||||||||||||||||
Sbjct: 67 cataccgatgatattcttgcaagttatgcagttgctgcctcaagcttgctgcctcc 122
Score = 54.0 bits (27), Expect = 5e-07
Identities = 33/35 (94%)
Strand = Plus / Minus
Query: 21 caagctagaggcagcaactgcatatcttgcaagaa 55
|||||| ||||||||||||||||| ||||||||||
Sbjct: 114 caagcttgaggcagcaactgcataacttgcaagaa 80
>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
Length = 134
Score = 65.9 bits (33), Expect = 1e-10
Identities = 42/45 (93%)
Strand = Plus / Plus
Query: 89 gcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 133
||||||| |||||||| || |||||||||||||||||||||||||
Sbjct: 90 gcaagttatgcagttgctgcctcaagcttgctgcctccctttgcc 134
Score = 44.1 bits (22), Expect = 5e-04
Identities = 28/30 (93%)
Strand = Plus / Minus
Query: 21 caagctagaggcagcaactgcatatcttgc 50
|||||| ||||||||||||||||| |||||
Sbjct: 119 caagcttgaggcagcaactgcataacttgc 90
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 65.9 bits (33), Expect = 1e-10
Identities = 45/49 (91%)
Strand = Plus / Plus
Query: 85 tcttgcaagttgtgcagttgttgtctcaagcttgctgcctccctttgcc 133
||||||||||| |||||||| || ||||||||| |||||||||||||||
Sbjct: 81 tcttgcaagttatgcagttgctgcctcaagcttcctgcctccctttgcc 129
Score = 50.1 bits (25), Expect = 8e-06
Identities = 31/33 (93%)
Strand = Plus / Minus
Query: 22 aagctagaggcagcaactgcatatcttgcaaga 54
||||| ||||||||||||||||| |||||||||
Sbjct: 113 aagcttgaggcagcaactgcataacttgcaaga 81
Score = 46.1 bits (23), Expect = 1e-04
Identities = 26/27 (96%)
Strand = Plus / Minus
Query: 97 tgcagttgttgtctcaagcttgctgcc 123
||||||||||||||| |||||||||||
Sbjct: 37 tgcagttgttgtctcgagcttgctgcc 11
