miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
          Length = 167

 Score =  161 bits (81), Expect = 3e-39
 Identities = 94/97 (96%), Gaps = 1/97 (1%)
 Strand = Plus / Plus

                                                                       
Query: 25  actgcattacttgcaagaaagtcacaaaatcaattgca-gaccatacttgtggctttctt 83
           ||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||
Sbjct: 63  actgcattacttgcaagaaagtcacaaaatccattgcaagatcatacttgtggctttctt 122

                                                
Query: 84  gcaagttgtgcagttgttgcctcaagcttgctgcctc 120
           |||||||||||||||||||||||||||||||||||||
Sbjct: 123 gcaagttgtgcagttgttgcctcaagcttgctgcctc 159



 Score = 85.7 bits (43), Expect = 1e-16
 Identities = 49/51 (96%)
 Strand = Plus / Plus

                                                             
Query: 1  ggtggcaccaagcatgaggcaggaactgcattacttgcaagaaagtcacaa 51
          ||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 8  ggtggcaccaagcattagtcaggaactgcattacttgcaagaaagtcacaa 58




>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
          Length = 229

 Score =  105 bits (53), Expect = 1e-22
 Identities = 53/53 (100%)
 Strand = Plus / Plus

                                                                
Query: 66  catacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 118
           |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 catacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 229



 Score = 95.6 bits (48), Expect = 1e-19
 Identities = 48/48 (100%)
 Strand = Plus / Plus

                                                          
Query: 4  ggcaccaagcatgaggcaggaactgcattacttgcaagaaagtcacaa 51
          ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1  ggcaccaagcatgaggcaggaactgcattacttgcaagaaagtcacaa 48




>RF00920;MIR444;ABXC01002896.1/41660-41790 4558:Sorghum bicolor
          (sorghum)
          Length = 131

 Score =  101 bits (51), Expect = 2e-21
 Identities = 51/51 (100%)
 Strand = Plus / Plus

                                                             
Query: 1  ggtggcaccaagcatgaggcaggaactgcattacttgcaagaaagtcacaa 51
          |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8  ggtggcaccaagcatgaggcaggaactgcattacttgcaagaaagtcacaa 58



 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 44/51 (86%)
 Strand = Plus / Minus

                                                              
Query: 68  tacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 118
           |||||||| |||||||||||||  |||||||  ||||||| ||||| ||||
Sbjct: 61  tacttgtgactttcttgcaagtaatgcagttcctgcctcatgcttggtgcc 11




>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
           vulgare (domesticated barley)
          Length = 173

 Score = 97.6 bits (49), Expect = 3e-20
 Identities = 55/57 (96%)
 Strand = Plus / Plus

                                                                    
Query: 64  accatacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctc 120
           |||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 109 accatacttgtggctttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctc 165



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 42/48 (87%)
 Strand = Plus / Minus

                                                           
Query: 4   ggcaccaagcatgaggcaggaactgcattacttgcaagaaagtcacaa 51
           |||| ||||| |||||||| |||||||  ||||||||||||| |||||
Sbjct: 163 ggcagcaagcttgaggcagcaactgcacgacttgcaagaaagccacaa 116



 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 31/34 (91%)
 Strand = Plus / Plus

                                            
Query: 4  ggcaccaagcatgaggcaggaactgcattacttg 37
          ||||||||||||||||||  ||||||| ||||||
Sbjct: 11 ggcaccaagcatgaggcaacaactgcagtacttg 44




>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
          Length = 165

 Score = 87.7 bits (44), Expect = 3e-17
 Identities = 44/44 (100%)
 Strand = Plus / Plus

                                                       
Query: 77  ctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctc 120
           ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctc 157



 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 37/41 (90%)
 Strand = Plus / Plus

                                                   
Query: 1  ggtggcaccaagcatgaggcaggaactgcattacttgcaag 41
          |||||||||||||||||||    ||||||||||||||||||
Sbjct: 8  ggtggcaccaagcatgaggttacaactgcattacttgcaag 48




>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
          Length = 128

 Score = 77.8 bits (39), Expect = 3e-14
 Identities = 42/43 (97%)
 Strand = Plus / Plus

                                                      
Query: 78  tttcttgcaagttgtgcagttgttgcctcaagcttgctgcctc 120
           ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 78  tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctc 120




>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
          Length = 130

 Score = 77.8 bits (39), Expect = 3e-14
 Identities = 42/43 (97%)
 Strand = Plus / Plus

                                                      
Query: 78  tttcttgcaagttgtgcagttgttgcctcaagcttgctgcctc 120
           ||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 80  tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctc 122



 Score = 50.1 bits (25), Expect = 7e-06
 Identities = 37/41 (90%)
 Strand = Plus / Minus

                                                    
Query: 78  tttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 118
           ||||||||||| | |||||||| |||||| |||||||||||
Sbjct: 51  tttcttgcaaggtatgcagttgctgcctctagcttgctgcc 11




>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
          Length = 128

 Score = 69.9 bits (35), Expect = 7e-12
 Identities = 41/43 (95%)
 Strand = Plus / Plus

                                                      
Query: 78  tttcttgcaagttgtgcagttgttgcctcaagcttgctgcctc 120
           ||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 78  tttcttgcaagctgtgcagttgttgtctcaagcttgctgcctc 120




>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
          Length = 129

 Score = 67.9 bits (34), Expect = 3e-11
 Identities = 40/42 (95%)
 Strand = Plus / Plus

                                                     
Query: 79  ttcttgcaagttgtgcagttgttgcctcaagcttgctgcctc 120
           |||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 80  ttcttgcaagttatgcagttgctgcctcaagcttgctgcctc 121



 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 36/40 (90%)
 Strand = Plus / Minus

                                                   
Query: 4   ggcaccaagcatgaggcaggaactgcattacttgcaagaa 43
           |||| ||||| |||||||| |||||||| |||||||||||
Sbjct: 119 ggcagcaagcttgaggcagcaactgcataacttgcaagaa 80




>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
          Length = 134

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 35/37 (94%)
 Strand = Plus / Plus

                                                
Query: 84  gcaagttgtgcagttgttgcctcaagcttgctgcctc 120
           ||||||| |||||||| ||||||||||||||||||||
Sbjct: 90  gcaagttatgcagttgctgcctcaagcttgctgcctc 126




>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
          Length = 129

 Score = 58.0 bits (29), Expect = 3e-08
 Identities = 38/41 (92%)
 Strand = Plus / Plus

                                                    
Query: 80  tcttgcaagttgtgcagttgttgcctcaagcttgctgcctc 120
           ||||||||||| |||||||| |||||||||||| |||||||
Sbjct: 81  tcttgcaagttatgcagttgctgcctcaagcttcctgcctc 121