miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00920;MIR444;EU947901.1/68-234 4577:Zea mays
Length = 167
Score = 161 bits (81), Expect = 3e-39
Identities = 94/97 (96%), Gaps = 1/97 (1%)
Strand = Plus / Plus
Query: 25 actgcattacttgcaagaaagtcacaaaatcaattgca-gaccatacttgtggctttctt 83
||||||||||||||||||||||||||||||| |||||| || ||||||||||||||||||
Sbjct: 63 actgcattacttgcaagaaagtcacaaaatccattgcaagatcatacttgtggctttctt 122
Query: 84 gcaagttgtgcagttgttgcctcaagcttgctgcctc 120
|||||||||||||||||||||||||||||||||||||
Sbjct: 123 gcaagttgtgcagttgttgcctcaagcttgctgcctc 159
Score = 85.7 bits (43), Expect = 1e-16
Identities = 49/51 (96%)
Strand = Plus / Plus
Query: 1 ggtggcaccaagcatgaggcaggaactgcattacttgcaagaaagtcacaa 51
||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct: 8 ggtggcaccaagcattagtcaggaactgcattacttgcaagaaagtcacaa 58
>RF00920;MIR444;EU971312.1/141-369 4577:Zea mays
Length = 229
Score = 105 bits (53), Expect = 1e-22
Identities = 53/53 (100%)
Strand = Plus / Plus
Query: 66 catacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 118
|||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 177 catacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 229
Score = 95.6 bits (48), Expect = 1e-19
Identities = 48/48 (100%)
Strand = Plus / Plus
Query: 4 ggcaccaagcatgaggcaggaactgcattacttgcaagaaagtcacaa 51
||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1 ggcaccaagcatgaggcaggaactgcattacttgcaagaaagtcacaa 48
>RF00920;MIR444;ABXC01002896.1/41660-41790 4558:Sorghum bicolor
(sorghum)
Length = 131
Score = 101 bits (51), Expect = 2e-21
Identities = 51/51 (100%)
Strand = Plus / Plus
Query: 1 ggtggcaccaagcatgaggcaggaactgcattacttgcaagaaagtcacaa 51
|||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 ggtggcaccaagcatgaggcaggaactgcattacttgcaagaaagtcacaa 58
Score = 46.1 bits (23), Expect = 1e-04
Identities = 44/51 (86%)
Strand = Plus / Minus
Query: 68 tacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 118
|||||||| ||||||||||||| ||||||| ||||||| ||||| ||||
Sbjct: 61 tacttgtgactttcttgcaagtaatgcagttcctgcctcatgcttggtgcc 11
>RF00920;MIR444;AK249841.1/242-414 112509:Hordeum vulgare subsp.
vulgare (domesticated barley)
Length = 173
Score = 97.6 bits (49), Expect = 3e-20
Identities = 55/57 (96%)
Strand = Plus / Plus
Query: 64 accatacttgtggctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctc 120
|||||||||||||||||||||||||| ||||||||| ||||||||||||||||||||
Sbjct: 109 accatacttgtggctttcttgcaagtcgtgcagttgctgcctcaagcttgctgcctc 165
Score = 48.1 bits (24), Expect = 3e-05
Identities = 42/48 (87%)
Strand = Plus / Minus
Query: 4 ggcaccaagcatgaggcaggaactgcattacttgcaagaaagtcacaa 51
|||| ||||| |||||||| ||||||| ||||||||||||| |||||
Sbjct: 163 ggcagcaagcttgaggcagcaactgcacgacttgcaagaaagccacaa 116
Score = 44.1 bits (22), Expect = 4e-04
Identities = 31/34 (91%)
Strand = Plus / Plus
Query: 4 ggcaccaagcatgaggcaggaactgcattacttg 37
|||||||||||||||||| ||||||| ||||||
Sbjct: 11 ggcaccaagcatgaggcaacaactgcagtacttg 44
>RF00920;MIR444;CU406550.1/236-400 4529:Oryza rufipogon
Length = 165
Score = 87.7 bits (44), Expect = 3e-17
Identities = 44/44 (100%)
Strand = Plus / Plus
Query: 77 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctc 120
||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 114 ctttcttgcaagttgtgcagttgttgcctcaagcttgctgcctc 157
Score = 50.1 bits (25), Expect = 7e-06
Identities = 37/41 (90%)
Strand = Plus / Plus
Query: 1 ggtggcaccaagcatgaggcaggaactgcattacttgcaag 41
||||||||||||||||||| ||||||||||||||||||
Sbjct: 8 ggtggcaccaagcatgaggttacaactgcattacttgcaag 48
>RF00920;MIR444;BT038959.1/401-528 4577:Zea mays
Length = 128
Score = 77.8 bits (39), Expect = 3e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 78 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcctc 120
||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 78 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctc 120
>RF00920;MIR444;BT065873.1/353-482 4577:Zea mays
Length = 130
Score = 77.8 bits (39), Expect = 3e-14
Identities = 42/43 (97%)
Strand = Plus / Plus
Query: 78 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcctc 120
||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 80 tttcttgcaagttgtgcagttgttgtctcaagcttgctgcctc 122
Score = 50.1 bits (25), Expect = 7e-06
Identities = 37/41 (90%)
Strand = Plus / Minus
Query: 78 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcc 118
||||||||||| | |||||||| |||||| |||||||||||
Sbjct: 51 tttcttgcaaggtatgcagttgctgcctctagcttgctgcc 11
>RF00920;MIR444;AK066992.1/189-316 39947:Oryza sativa Japonica Group
Length = 128
Score = 69.9 bits (35), Expect = 7e-12
Identities = 41/43 (95%)
Strand = Plus / Plus
Query: 78 tttcttgcaagttgtgcagttgttgcctcaagcttgctgcctc 120
||||||||||| ||||||||||||| |||||||||||||||||
Sbjct: 78 tttcttgcaagctgtgcagttgttgtctcaagcttgctgcctc 120
>RF00920;MIR444;AK063114.1/148-276 39947:Oryza sativa Japonica Group
Length = 129
Score = 67.9 bits (34), Expect = 3e-11
Identities = 40/42 (95%)
Strand = Plus / Plus
Query: 79 ttcttgcaagttgtgcagttgttgcctcaagcttgctgcctc 120
|||||||||||| |||||||| ||||||||||||||||||||
Sbjct: 80 ttcttgcaagttatgcagttgctgcctcaagcttgctgcctc 121
Score = 48.1 bits (24), Expect = 3e-05
Identities = 36/40 (90%)
Strand = Plus / Minus
Query: 4 ggcaccaagcatgaggcaggaactgcattacttgcaagaa 43
|||| ||||| |||||||| |||||||| |||||||||||
Sbjct: 119 ggcagcaagcttgaggcagcaactgcataacttgcaagaa 80
>RF00920;MIR444;EU971967.1/288-421 4577:Zea mays
Length = 134
Score = 58.0 bits (29), Expect = 3e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 84 gcaagttgtgcagttgttgcctcaagcttgctgcctc 120
||||||| |||||||| ||||||||||||||||||||
Sbjct: 90 gcaagttatgcagttgctgcctcaagcttgctgcctc 126
>RF00920;MIR444;EU948115.1/123-251 4577:Zea mays
Length = 129
Score = 58.0 bits (29), Expect = 3e-08
Identities = 38/41 (92%)
Strand = Plus / Plus
Query: 80 tcttgcaagttgtgcagttgttgcctcaagcttgctgcctc 120
||||||||||| |||||||| |||||||||||| |||||||
Sbjct: 81 tcttgcaagttatgcagttgctgcctcaagcttcctgcctc 121
