miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00104;mir-10;AAJJ01000198.1/34838-34768 7070:Tribolium
castaneum (red flour beetle)
Length = 71
Score = 67.9 bits (34), Expect = 2e-11
Identities = 65/73 (89%), Gaps = 3/73 (4%)
Strand = Plus / Minus
Query: 3 cacacgaacctctctagaaccgaatttgtcttgtgatg-caactacaaattcggatctac 61
||||| |||||||||||||||||||||||| |||| ||| ||||||||||||||||
Sbjct: 71 cacacaaacctctctagaaccgaatttgtcgcctgatttcaa--acaaattcggatctac 14
Query: 62 agggtagatgtag 74
|||||||||||||
Sbjct: 13 agggtagatgtag 1
>RF00104;mir-10;ABJB011126277.1/3833-3903 6945:Ixodes scapularis
(black-legged tick)
Length = 71
Score = 61.9 bits (31), Expect = 1e-09
Identities = 66/75 (88%), Gaps = 7/75 (9%)
Strand = Plus / Minus
Query: 3 cacacgaacctctctagaaccgaatttgt---cttgtgatgcaactacaaattcggatct 59
||||| ||||||||||||||||||||||| ||||| |||| ||||||||||||||
Sbjct: 71 cacacaaacctctctagaaccgaatttgtagtcttgt--tgcag--acaaattcggatct 16
Query: 60 acagggtagatgtag 74
|||||||||||||||
Sbjct: 15 acagggtagatgtag 1
>RF00104;mir-10;AAPT01019387.1/166139-166214 7222:Drosophila
grimshawi
Length = 76
Score = 52.0 bits (26), Expect = 1e-06
Identities = 29/30 (96%)
Strand = Plus / Minus
Query: 3 cacacgaacctctctagaaccgaatttgtc 32
||||| ||||||||||||||||||||||||
Sbjct: 76 cacacaaacctctctagaaccgaatttgtc 47
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggtaga 69
||||||||||||||||||||||||
Sbjct: 29 acaaattcggatctacagggtaga 6
>RF00104;mir-10;ABKQ02021837.1/5843-5769 377270:Anopheles gambiae
S
Length = 75
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggtagatgtag 74
||||||||||||||||||||| |||||||
Sbjct: 29 acaaattcggatctacagggtggatgtag 1
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 3 cacacgaacctctctagaaccgaatttgt 31
||||| |||||||||||||||||||||||
Sbjct: 75 cacacaaacctctctagaaccgaatttgt 47
>RF00104;mir-10;AAQB01008633.1/164536-164458 7260:Drosophila
willistoni
Length = 79
Score = 50.1 bits (25), Expect = 4e-06
Identities = 28/29 (96%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggtagatgtag 74
|||||||||||||||||||||||| ||||
Sbjct: 29 acaaattcggatctacagggtagacgtag 1
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 9 aacctctctagaaccgaatttgtc 32
||||||||||||||||||||||||
Sbjct: 71 aacctctctagaaccgaatttgtc 48
>RF00104;mir-10;AC165428.1/216964-216881 7668:Strongylocentrotus
purpuratus
Length = 84
Score = 48.1 bits (24), Expect = 2e-05
Identities = 27/28 (96%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggtagatgta 73
||||||||||||||||||||| ||||||
Sbjct: 29 acaaattcggatctacagggttgatgta 2
>RF00104;mir-10;AAPU01011054.1/176581-176658 7230:Drosophila
mojavensis
Length = 78
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggtaga 69
||||||||||||||||||||||||
Sbjct: 29 acaaattcggatctacagggtaga 6
Score = 48.1 bits (24), Expect = 2e-05
Identities = 24/24 (100%)
Strand = Plus / Minus
Query: 9 aacctctctagaaccgaatttgtc 32
||||||||||||||||||||||||
Sbjct: 70 aacctctctagaaccgaatttgtc 47
>RF00104;mir-10;AAGU02055274.1/837-762 9785:Loxodonta africana
(African savanna elephant)
Length = 76
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggta 67
||||||||||||||||||||||
Sbjct: 29 acaaattcggatctacagggta 8
>RF00104;mir-10;AADN02014571.1/896-822 9031:Gallus gallus
(chicken)
Length = 75
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggta 67
||||||||||||||||||||||
Sbjct: 29 acaaattcggatctacagggta 8
>RF00104;mir-10;AC145793.2/105735-105809 8364:Xenopus (Silurana)
tropicalis (western clawed frog)
Length = 75
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggta 67
||||||||||||||||||||||
Sbjct: 29 acaaattcggatctacagggta 8
>RF00104;mir-10;AC148590.12/25796-25721 7924:Amia calva (bowfin)
Length = 76
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggta 67
||||||||||||||||||||||
Sbjct: 29 acaaattcggatctacagggta 8
>RF00104;mir-10;AAVX01627291.1/678-603 7868:Callorhinchus milii
(ghost shark)
Length = 76
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggta 67
||||||||||||||||||||||
Sbjct: 29 acaaattcggatctacagggta 8
>RF00104;mir-10;AC150390.2/218469-218395 7739:Branchiostoma
floridae (Florida lancelet)
Length = 75
Score = 44.1 bits (22), Expect = 2e-04
Identities = 22/22 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggta 67
||||||||||||||||||||||
Sbjct: 29 acaaattcggatctacagggta 8
>RF00104;mir-10;CAAB01000183.1/83579-83654 31033:Takifugu rubripes
Length = 76
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggt 66
|||||||||||||||||||||
Sbjct: 29 acaaattcggatctacagggt 9
>RF00104;mir-10;AY303234.1/14458-14526 39110:Sphoeroides nephelus
Length = 69
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggt 66
|||||||||||||||||||||
Sbjct: 29 acaaattcggatctacagggt 9
>RF00104;mir-10;EF594314.1/41875-41950 8153:Haplochromis burtoni
Length = 76
Score = 42.1 bits (21), Expect = 0.001
Identities = 21/21 (100%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggt 66
|||||||||||||||||||||
Sbjct: 29 acaaattcggatctacagggt 9
>RF00104;mir-10;AANH01009874.1/6075-5997 69293:Gasterosteus
aculeatus (three-spined stickleback)
Length = 79
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggtagat 70
|||||| ||||||||||||||||||
Sbjct: 29 acaaatccggatctacagggtagat 5
>RF00104;mir-10;AB232920.1/58331-58253 8090:Oryzias latipes
(Japanese medaka)
Length = 79
Score = 42.1 bits (21), Expect = 0.001
Identities = 24/25 (96%)
Strand = Plus / Minus
Query: 46 acaaattcggatctacagggtagat 70
|||||| ||||||||||||||||||
Sbjct: 29 acaaatccggatctacagggtagat 5
