miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00757;mir-275;BABH01005296.1/11764-11850 7091:Bombyx mori
          (domestic silkworm)
          Length = 87

 Score = 56.0 bits (28), Expect = 9e-08
 Identities = 28/28 (100%)
 Strand = Plus / Plus

                                      
Query: 59 cgagtcaggtacctgaagtagcgcgcgg 86
          ||||||||||||||||||||||||||||
Sbjct: 49 cgagtcaggtacctgaagtagcgcgcgg 76




>RF00757;mir-275;ABJB010317264.1/3436-3346 6945:Ixodes scapularis
          (black-legged tick)
          Length = 91

 Score = 54.0 bits (27), Expect = 4e-07
 Identities = 27/27 (100%)
 Strand = Plus / Plus

                                     
Query: 61 agtcaggtacctgaagtagcgcgcgga 87
          |||||||||||||||||||||||||||
Sbjct: 54 agtcaggtacctgaagtagcgcgcgga 80




>RF00757;mir-275;AAZX01002044.1/14734-14647 7425:Nasonia
          vitripennis (jewel wasp)
          Length = 88

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 61 agtcaggtacctgaagtagcgcgcg 85
          |||||||||||||||||||||||||
Sbjct: 53 agtcaggtacctgaagtagcgcgcg 77




>RF00757;mir-275;AADG05001619.1/13993-14083 7460:Apis mellifera
          (honey bee)
          Length = 91

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 61 agtcaggtacctgaagtagcgcgcg 85
          |||||||||||||||||||||||||
Sbjct: 57 agtcaggtacctgaagtagcgcgcg 81




>RF00757;mir-275;AAWU01017837.1/19596-19687 7176:Culex
          quinquefasciatus (southern house mosquito)
          Length = 92

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 61 agtcaggtacctgaagtagcgcgcg 85
          |||||||||||||||||||||||||
Sbjct: 56 agtcaggtacctgaagtagcgcgcg 80




>RF00757;mir-275;AAGE02001651.1/96625-96717 7159:Aedes aegypti
          (yellow fever mosquito)
          Length = 93

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 61 agtcaggtacctgaagtagcgcgcg 85
          |||||||||||||||||||||||||
Sbjct: 56 agtcaggtacctgaagtagcgcgcg 80




>RF00757;mir-275;ABKQ02010004.1/3068-3162 377270:Anopheles gambiae
          S
          Length = 95

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 61 agtcaggtacctgaagtagcgcgcg 85
          |||||||||||||||||||||||||
Sbjct: 59 agtcaggtacctgaagtagcgcgcg 83




>RF00757;mir-275;AAKO01000986.1/85073-85163 7238:Drosophila
          sechellia
          Length = 91

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 61 agtcaggtacctgaagtagcgcgcg 85
          |||||||||||||||||||||||||
Sbjct: 55 agtcaggtacctgaagtagcgcgcg 79




>RF00757;mir-275;AAQB01006829.1/458431-458336 7260:Drosophila
          willistoni
          Length = 96

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 61 agtcaggtacctgaagtagcgcgcg 85
          |||||||||||||||||||||||||
Sbjct: 60 agtcaggtacctgaagtagcgcgcg 84




>RF00757;mir-275;AAFS01000035.1/187021-187111 46245:Drosophila
          pseudoobscura pseudoobscura
          Length = 91

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 61 agtcaggtacctgaagtagcgcgcg 85
          |||||||||||||||||||||||||
Sbjct: 55 agtcaggtacctgaagtagcgcgcg 79




>RF00757;mir-275;AAPP01015737.1/35785-35873 7217:Drosophila
          ananassae
          Length = 89

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 61 agtcaggtacctgaagtagcgcgcg 85
          |||||||||||||||||||||||||
Sbjct: 53 agtcaggtacctgaagtagcgcgcg 77




>RF00757;mir-275;AANI01016257.1/59564-59470 7244:Drosophila
          virilis
          Length = 95

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 61 agtcaggtacctgaagtagcgcgcg 85
          |||||||||||||||||||||||||
Sbjct: 58 agtcaggtacctgaagtagcgcgcg 82




>RF00757;mir-275;AAJJ01000649.1/41251-41341 7070:Tribolium
          castaneum (red flour beetle)
          Length = 91

 Score = 50.1 bits (25), Expect = 6e-06
 Identities = 25/25 (100%)
 Strand = Plus / Plus

                                   
Query: 61 agtcaggtacctgaagtagcgcgcg 85
          |||||||||||||||||||||||||
Sbjct: 54 agtcaggtacctgaagtagcgcgcg 78




>RF00757;mir-275;AAZO01007192.1/28746-28841 121224:Pediculus
          humanus corporis (human body louse)
          Length = 96

 Score = 48.1 bits (24), Expect = 2e-05
 Identities = 27/28 (96%)
 Strand = Plus / Plus

                                      
Query: 61 agtcaggtacctgaagtagcgcgcggag 88
          |||||||||||| |||||||||||||||
Sbjct: 60 agtcaggtacctaaagtagcgcgcggag 87




>RF00757;mir-275;ABLF01003185.1/42778-42870 7029:Acyrthosiphon
          pisum (pea aphid)
          Length = 93

 Score = 46.1 bits (23), Expect = 9e-05
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                 
Query: 61 agtcaggtacctgaagtagcgcg 83
          |||||||||||||||||||||||
Sbjct: 57 agtcaggtacctgaagtagcgcg 79