miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: BLAST


BLASTN 2.2.20 [Feb-08-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
>RF00657;mir-184;BAAB01083504.1/1731-1651 7091:Bombyx mori (domestic
           silkworm)
          Length = 81

 Score = 52.0 bits (26), Expect = 2e-06
 Identities = 26/26 (100%)
 Strand = Plus / Plus

                                     
Query: 88  ctactggacggagaactgataagggc 113
           ||||||||||||||||||||||||||
Sbjct: 46  ctactggacggagaactgataagggc 71




>RF00657;mir-184;ABLF01000583.1/9706-9626 7029:Acyrthosiphon pisum
           (pea aphid)
          Length = 81

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  actggacggagaactgataagggc 113
           ||||||||||||||||||||||||
Sbjct: 48  actggacggagaactgataagggc 71




>RF00657;mir-184;AC185288.4/52827-52910 7425:Nasonia vitripennis
           (jewel wasp)
          Length = 84

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  actggacggagaactgataagggc 113
           ||||||||||||||||||||||||
Sbjct: 51  actggacggagaactgataagggc 74




>RF00657;mir-184;AADG05004767.1/16887-16970 7460:Apis mellifera
           (honey bee)
          Length = 84

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  actggacggagaactgataagggc 113
           ||||||||||||||||||||||||
Sbjct: 51  actggacggagaactgataagggc 74




>RF00657;mir-184;AAGE02019030.1/3534-3452 7159:Aedes aegypti (yellow
           fever mosquito)
          Length = 83

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  actggacggagaactgataagggc 113
           ||||||||||||||||||||||||
Sbjct: 50  actggacggagaactgataagggc 73




>RF00657;mir-184;AAAB01008980.1/6487239-6487319 180454:Anopheles
           gambiae str. PEST
          Length = 81

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  actggacggagaactgataagggc 113
           ||||||||||||||||||||||||
Sbjct: 48  actggacggagaactgataagggc 71




>RF00657;mir-184;AAPU01010071.1/6500-6418 7230:Drosophila mojavensis
          Length = 83

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  actggacggagaactgataagggc 113
           ||||||||||||||||||||||||
Sbjct: 50  actggacggagaactgataagggc 73




>RF00657;mir-184;AAJJ01000543.1/40724-40802 7070:Tribolium castaneum
           (red flour beetle)
          Length = 79

 Score = 48.1 bits (24), Expect = 3e-05
 Identities = 24/24 (100%)
 Strand = Plus / Plus

                                   
Query: 90  actggacggagaactgataagggc 113
           ||||||||||||||||||||||||
Sbjct: 46  actggacggagaactgataagggc 69




>RF00657;mir-184;AAGJ02116195.1/16137-16046 7668:Strongylocentrotus
           purpuratus
          Length = 92

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 91  ctggacggagaactgataagggc 113
           |||||||||||||||||||||||
Sbjct: 60  ctggacggagaactgataagggc 82




>RF00657;mir-184;ABEP02024042.1/7891-7807 7739:Branchiostoma
           floridae (Florida lancelet)
          Length = 85

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 91  ctggacggagaactgataagggc 113
           |||||||||||||||||||||||
Sbjct: 53  ctggacggagaactgataagggc 75




>RF00657;mir-184;ABJB010201781.1/2990-3072 6945:Ixodes scapularis
           (black-legged tick)
          Length = 83

 Score = 46.1 bits (23), Expect = 1e-04
 Identities = 23/23 (100%)
 Strand = Plus / Plus

                                  
Query: 91  ctggacggagaactgataagggc 113
           |||||||||||||||||||||||
Sbjct: 51  ctggacggagaactgataagggc 73




>RF00657;mir-184;AABS01000135.1/138381-138283 7719:Ciona
           intestinalis
          Length = 99

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 92  tggacggagaactgataagggc 113
           ||||||||||||||||||||||
Sbjct: 68  tggacggagaactgataagggc 89




>RF00657;mir-184;AACT01014507.1/19083-19005 51511:Ciona savignyi
          Length = 79

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 92  tggacggagaactgataagggc 113
           ||||||||||||||||||||||
Sbjct: 48  tggacggagaactgataagggc 69




>RF00657;mir-184;AANN01245614.1/108-185 9365:Erinaceus europaeus
           (western European hedgehog)
          Length = 78

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 91  ctggacggagaactgataaggg 112
           ||||||||||||||||||||||
Sbjct: 46  ctggacggagaactgataaggg 67




>RF00657;mir-184;CR352253.9/159514-159598 7955:Danio rerio
           (zebrafish)
          Length = 85

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 92  tggacggagaactgataagggc 113
           ||||||||||||||||||||||
Sbjct: 54  tggacggagaactgataagggc 75




>RF00657;mir-184;CR356246.5/16955-16871 7955:Danio rerio (zebrafish)
          Length = 85

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 92  tggacggagaactgataagggc 113
           ||||||||||||||||||||||
Sbjct: 54  tggacggagaactgataagggc 75




>RF00657;mir-184;AANH01000282.1/6070-5986 69293:Gasterosteus
           aculeatus (three-spined stickleback)
          Length = 85

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 92  tggacggagaactgataagggc 113
           ||||||||||||||||||||||
Sbjct: 54  tggacggagaactgataagggc 75




>RF00657;mir-184;BAAF04083164.1/7464-7548 8090:Oryzias latipes
           (Japanese medaka)
          Length = 85

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 92  tggacggagaactgataagggc 113
           ||||||||||||||||||||||
Sbjct: 54  tggacggagaactgataagggc 75




>RF00657;mir-184;AAVX01446026.1/144-63 7868:Callorhinchus milii
           (ghost shark)
          Length = 82

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 92  tggacggagaactgataagggc 113
           ||||||||||||||||||||||
Sbjct: 51  tggacggagaactgataagggc 72




>RF00657;mir-184;AAZO01006369.1/2415-2497 121224:Pediculus humanus
           corporis (human body louse)
          Length = 83

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 92  tggacggagaactgataagggc 113
           ||||||||||||||||||||||
Sbjct: 52  tggacggagaactgataagggc 73




>RF00657;mir-184;ABLF01040198.1/2219-2138 7029:Acyrthosiphon pisum
           (pea aphid)
          Length = 82

 Score = 44.1 bits (22), Expect = 4e-04
 Identities = 22/22 (100%)
 Strand = Plus / Plus

                                 
Query: 88  ctactggacggagaactgataa 109
           ||||||||||||||||||||||
Sbjct: 47  ctactggacggagaactgataa 68