miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00677;MIR168;AM900035.1/113-248 264416:Diplotaxis tenuifolia
Length = 136
Score = 129 bits (65), Expect = 1e-29
Identities = 124/140 (88%), Gaps = 4/140 (2%)
Strand = Plus / Plus
Query: 16 tcaccgtggggctcggattcgcttggtgcaggtcgggactgatatgctgacacaaccact 75
||||||| |||||||||||||||||||||||||||||||| || ||||||||| ||||
Sbjct: 1 tcaccgtcgggctcggattcgcttggtgcaggtcgggactaatccgctgacacagccac- 59
Query: 76 ggtgcttttgccttattggtttgtgagcaggtattggctcccgccttgcatcaattgaat 135
||| ||| |||||||| ||||||||||| |||||||||||||||||||||| |||||
Sbjct: 60 -gtgtcttttacttattgg-ttgtgagcagggattggctcccgccttgcatcaactgaat 117
Query: 136 cggagcctccaatggtgaaa 155
||||| |||| |||||||||
Sbjct: 118 cggag-ctcccatggtgaaa 136
>RF00677;MIR168;AM900039.1/133-271 98038:Thellungiella halophila
Length = 139
Score = 115 bits (58), Expect = 2e-25
Identities = 114/130 (87%), Gaps = 2/130 (1%)
Strand = Plus / Plus
Query: 16 tcaccgtggggctcggattcgcttggtgcaggtcggga-ctgatatgctgacacaaccac 74
||||||| |||||||||||||||||||||||||||||| || || ||||||||| ||||
Sbjct: 1 tcaccgtcgggctcggattcgcttggtgcaggtcgggaactaatttgctgacacggccac 60
Query: 75 tggtgcttttgccttattggtttgtgagcaggtattggctcccgccttgcatcaattgaa 134
| | |||| | || |||||||||||||||| ||||| |||||||||||||||| ||||
Sbjct: 61 gtgag-ttttcctttgttggtttgtgagcagggattggatcccgccttgcatcaactgaa 119
Query: 135 tcggagcctc 144
||||||||||
Sbjct: 120 tcggagcctc 129
>RF00677;MIR168;AM900025.1/123-261 81982:Pseudoturritis turrita
Length = 139
Score = 85.7 bits (43), Expect = 2e-16
Identities = 121/142 (85%), Gaps = 5/142 (3%)
Strand = Plus / Plus
Query: 16 tcaccgtggggctcggattcgcttggtgcaggtcggga-ctgatatgctgac-acaacca 73
||||||| |||||||||||||||||||||||||||||| ||||| |||| ||| |||
Sbjct: 1 tcaccgtcgggctcggattcgcttggtgcaggtcgggaactgattggctggttacagcca 60
Query: 74 ctggtgcttttgccttattggtttgtgagcaggtattggctcccgccttgcatcaattga 133
| ||| || | |||||||||||||||||| ||||| |||||||||||||||| |||
Sbjct: 61 c--gtggcgtttctttattggtttgtgagcagtgattggatcccgccttgcatcaactga 118
Query: 134 atcggagcctccaatggtgaaa 155
||||||||| || |||||||||
Sbjct: 119 atcggagcc-ccgatggtgaaa 139
>RF00677;MIR168;AM900027.1/105-243 71232:Erysimum cheiri
Length = 139
Score = 85.7 bits (43), Expect = 2e-16
Identities = 112/130 (86%), Gaps = 5/130 (3%)
Strand = Plus / Plus
Query: 16 tcaccgtggggctcggattcgcttggtgcaggtcggg-actgatatgctgacacaaccac 74
||||||| ||||||||||||||||||||||||||||| || | ||||||||| ||||
Sbjct: 1 tcaccgtcgggctcggattcgcttggtgcaggtcgggaaccaactggctgacacagccac 60
Query: 75 tggtg-cttttgccttattggtttgtgag-caggtattggctcccgccttgcatcaattg 132
||| ||| | |||| |||||||||||| |||| ||||| |||||||||||||||| ||
Sbjct: 61 --gtgacttgtaccttgttggtttgtgagccagggattggatcccgccttgcatcaactg 118
Query: 133 aatcggagcc 142
||||||||||
Sbjct: 119 aatcggagcc 128
>RF00677;MIR168;AM900033.1/151-286 71322:Calepina irregularis
Length = 136
Score = 81.8 bits (41), Expect = 3e-15
Identities = 102/120 (85%), Gaps = 3/120 (2%)
Strand = Plus / Plus
Query: 24 gggctcggattcgcttggtgcaggtcggg-actgatatgctgacacaaccactggtgctt 82
||||||||||||||||||||||||||||| |||||| ||||||||| |||| ||| |
Sbjct: 9 gggctcggattcgcttggtgcaggtcgggaactgattggctgacacagccac--gtggat 66
Query: 83 ttgccttattggtttgtgagcaggtattggctcccgccttgcatcaattgaatcggagcc 142
| | | ||||| |||||||||| || |||||||||||||||||| ||||||||||||
Sbjct: 67 tcccatcattggcatgtgagcagggatctgctcccgccttgcatcaactgaatcggagcc 126
>RF00677;MIR168;DQ108858.1/128-269 3702:Arabidopsis thaliana (thale
cress)
Length = 142
Score = 81.8 bits (41), Expect = 3e-15
Identities = 53/57 (92%)
Strand = Plus / Plus
Query: 88 ttattggtttgtgagcaggtattggctcccgccttgcatcaattgaatcggagcctc 144
||||||||||||||||||| ||||| |||||||||||||||| ||||||||| ||||
Sbjct: 77 ttattggtttgtgagcagggattggatcccgccttgcatcaactgaatcggatcctc 133
>RF00677;MIR168;AC232514.1/122335-122471 51351:Brassica rapa subsp.
pekinensis
Length = 137
Score = 73.8 bits (37), Expect = 7e-13
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 92 tggtttgtgagcaggtattggctcccgccttgcatcaattgaatcggag 140
||||||||||||||| ||||| |||||||||||||||| ||||||||||
Sbjct: 75 tggtttgtgagcagggattggatcccgccttgcatcaaatgaatcggag 123
>RF00677;MIR168;AM900031.1/134-271 50463:Cardamine hirsuta (hairy
bittercress)
Length = 138
Score = 69.9 bits (35), Expect = 1e-11
Identities = 97/114 (85%), Gaps = 4/114 (3%)
Strand = Plus / Plus
Query: 28 tcggattcgcttggtgcaggtcggga-ctgatatgctgacacaaccactggtg-cttttg 85
|||||||||||||||||||||||||| || || ||||||||| |||| ||| |||
Sbjct: 13 tcggattcgcttggtgcaggtcgggaactaattggctgacacagccac--gtgacttaat 70
Query: 86 ccttattggtttgtgagcaggtattggctcccgccttgcatcaattgaatcgga 139
||| ||||| |||||| |||| ||||| |||||||||||||||| |||||||||
Sbjct: 71 cctcattggcttgtgaccaggaattggatcccgccttgcatcaactgaatcgga 124
>RF00677;MIR168;AM900030.1/155-291 264402:Capsella grandiflora
Length = 137
Score = 60.0 bits (30), Expect = 1e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 24 gggctcggattcgcttggtgcaggtcggga 53
||||||||||||||||||||||||||||||
Sbjct: 9 gggctcggattcgcttggtgcaggtcggga 38
Score = 54.0 bits (27), Expect = 6e-07
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 108 attggctcccgccttgcatcaattgaatcggagcc 142
||||| |||||||||||||||| ||||||||||||
Sbjct: 91 attggatcccgccttgcatcaactgaatcggagcc 125
>RF00677;MIR168;AM900024.1/109-239 72657:Aethionema grandiflorum
Length = 131
Score = 60.0 bits (30), Expect = 1e-08
Identities = 36/38 (94%)
Strand = Plus / Plus
Query: 16 tcaccgtggggctcggattcgcttggtgcaggtcggga 53
||||||| | ||||||||||||||||||||||||||||
Sbjct: 1 tcaccgtcgagctcggattcgcttggtgcaggtcggga 38
>RF00677;MIR168;AM900011.1/89-224 71322:Calepina irregularis
Length = 136
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 27 ctcggattcgcttggtgcaggtcggga 53
|||||||||||||||||||||||||||
Sbjct: 12 ctcggattcgcttggtgcaggtcggga 38
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 114 tcccgccttgcatcaattgaatcggag 140
|||||||||||||||| ||||||||||
Sbjct: 98 tcccgccttgcatcaactgaatcggag 124
>RF00677;MIR168;AB020744.1/40369-40244 3702:Arabidopsis thaliana
(thale cress)
Length = 126
Score = 54.0 bits (27), Expect = 6e-07
Identities = 27/27 (100%)
Strand = Plus / Plus
Query: 27 ctcggattcgcttggtgcaggtcggga 53
|||||||||||||||||||||||||||
Sbjct: 12 ctcggattcgcttggtgcaggtcggga 38
>RF00677;MIR168;AM900008.1/99-224 264402:Capsella grandiflora
Length = 126
Score = 52.0 bits (26), Expect = 2e-06
Identities = 26/26 (100%)
Strand = Plus / Plus
Query: 28 tcggattcgcttggtgcaggtcggga 53
||||||||||||||||||||||||||
Sbjct: 13 tcggattcgcttggtgcaggtcggga 38
>RF00677;MIR168;ABIM01019962.1/1-76 3649:Carica papaya (papaya)
Length = 76
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 108 attggctcccgccttgcatcaattgaatcggag 140
||||| |||||||||||||||| ||||||||||
Sbjct: 32 attggatcccgccttgcatcaactgaatcggag 64
>RF00677;MIR168;EF145817.1/52-230 3694:Populus trichocarpa
Length = 179
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 108 attggctcccgccttgcatcaattgaatcggag 140
||||| |||||||||||||||| ||||||||||
Sbjct: 135 attggatcccgccttgcatcaactgaatcggag 167
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 gattcgcttggtgcaggtcggga 53
|||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcggga 38
>RF00677;MIR168;AARH01009157.1/137211-137057 3694:Populus
trichocarpa
Length = 155
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 108 attggctcccgccttgcatcaattgaatcggag 140
||||| |||||||||||||||| ||||||||||
Sbjct: 111 attggatcccgccttgcatcaactgaatcggag 143
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 attcgcttggtgcaggtcggga 53
||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggga 38
>RF00677;MIR168;CU302345.1/65608-65728 3880:Medicago truncatula
(barrel medic)
Length = 121
Score = 50.1 bits (25), Expect = 1e-05
Identities = 31/33 (93%)
Strand = Plus / Plus
Query: 108 attggctcccgccttgcatcaattgaatcggag 140
||||| |||||||||||||||| ||||||||||
Sbjct: 77 attggatcccgccttgcatcaactgaatcggag 109
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 attcgcttggtgcaggtcggga 53
||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggga 38
>RF00677;MIR168;AM900013.1/66-191 313683:Malcolmia maritima
Length = 126
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 gattcgcttggtgcaggtcggga 53
|||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcggga 38
>RF00677;MIR168;AM900009.1/86-211 50463:Cardamine hirsuta (hairy
bittercress)
Length = 126
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 gattcgcttggtgcaggtcggga 53
|||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcggga 38
>RF00677;MIR168;AM900001.1/83-191 72657:Aethionema grandiflorum
Length = 109
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 gattcgcttggtgcaggtcggga 53
|||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcggga 38
>RF00677;MIR168;CU302337.1/59396-59285 3880:Medicago truncatula
(barrel medic)
Length = 112
Score = 46.1 bits (23), Expect = 2e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 31 gattcgcttggtgcaggtcggga 53
|||||||||||||||||||||||
Sbjct: 16 gattcgcttggtgcaggtcggga 38
>RF00677;MIR168;CAAP02004587.1/23864-24010 29760:Vitis vinifera
Length = 147
Score = 46.1 bits (23), Expect = 2e-04
Identities = 26/27 (96%)
Strand = Plus / Plus
Query: 114 tcccgccttgcatcaattgaatcggag 140
|||||||||||||||| ||||||||||
Sbjct: 109 tcccgccttgcatcaactgaatcggag 135
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 attcgcttggtgcaggtcggga 53
||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggga 38
>RF00677;MIR168;AASG02009178.1/8089-7934 3988:Ricinus communis
(castor bean)
Length = 156
Score = 44.1 bits (22), Expect = 6e-04
Identities = 22/22 (100%)
Strand = Plus / Plus
Query: 32 attcgcttggtgcaggtcggga 53
||||||||||||||||||||||
Sbjct: 17 attcgcttggtgcaggtcggga 38
Score = 44.1 bits (22), Expect = 6e-04
Identities = 28/30 (93%)
Strand = Plus / Plus
Query: 108 attggctcccgccttgcatcaattgaatcg 137
||||| |||||||||||||||| |||||||
Sbjct: 112 attggatcccgccttgcatcaactgaatcg 141
