miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00640;MIR167_1;AAAA02020690.1/41483-41278 39946:Oryza sativa
Indica Group
Length = 206
Score = 60.0 bits (30), Expect = 3e-08
Identities = 30/30 (100%)
Strand = Plus / Plus
Query: 14 tgagaggctgaagctgccagcatgatctgg 43
||||||||||||||||||||||||||||||
Sbjct: 6 tgagaggctgaagctgccagcatgatctgg 35
>RF00640;MIR167_1;AARH01012195.1/26948-26514 3694:Populus
trichocarpa
Length = 435
Score = 56.0 bits (28), Expect = 4e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 12 tttgagaggctgaagctgccagcatgatctgg 43
||||||||| ||||||||||||||||||||||
Sbjct: 4 tttgagaggttgaagctgccagcatgatctgg 35
>RF00640;MIR167_1;AC212802.1/77650-78085 3694:Populus trichocarpa
Length = 436
Score = 56.0 bits (28), Expect = 4e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 12 tttgagaggctgaagctgccagcatgatctgg 43
||||||||| ||||||||||||||||||||||
Sbjct: 4 tttgagaggttgaagctgccagcatgatctgg 35
>RF00640;MIR167_1;BABK01002345.1/2496-2649 34305:Lotus japonicus
Length = 154
Score = 56.0 bits (28), Expect = 4e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 12 tttgagaggctgaagctgccagcatgatctgg 43
||||||||| ||||||||||||||||||||||
Sbjct: 4 tttgagaggttgaagctgccagcatgatctgg 35
>RF00640;MIR167_1;CAAP02000801.1/49293-49646 29760:Vitis vinifera
Length = 354
Score = 56.0 bits (28), Expect = 4e-07
Identities = 31/32 (96%)
Strand = Plus / Plus
Query: 12 tttgagaggctgaagctgccagcatgatctgg 43
||||||||| ||||||||||||||||||||||
Sbjct: 4 tttgagaggttgaagctgccagcatgatctgg 35
>RF00640;MIR167_1;EU549029.1/122-486 3702:Arabidopsis thaliana
(thale cress)
Length = 365
Score = 54.0 bits (27), Expect = 2e-06
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 9 ggttttgagaggctgaagctgccagcatgatctgg 43
|||||| ||| ||||||||||||||||||||||||
Sbjct: 1 ggtttttagaagctgaagctgccagcatgatctgg 35
>RF00640;MIR167_1;EU549031.1/122-508 3702:Arabidopsis thaliana
(thale cress)
Length = 387
Score = 54.0 bits (27), Expect = 2e-06
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 9 ggttttgagaggctgaagctgccagcatgatctgg 43
|||||| ||| ||||||||||||||||||||||||
Sbjct: 1 ggtttttagaagctgaagctgccagcatgatctgg 35
>RF00640;MIR167_1;EU549010.1/122-488 3702:Arabidopsis thaliana
(thale cress)
Length = 367
Score = 54.0 bits (27), Expect = 2e-06
Identities = 33/35 (94%)
Strand = Plus / Plus
Query: 9 ggttttgagaggctgaagctgccagcatgatctgg 43
|||||| ||| ||||||||||||||||||||||||
Sbjct: 1 ggtttttagaagctgaagctgccagcatgatctgg 35
>RF00640;MIR167_1;ABXC01006864.1/41201-41318 4558:Sorghum bicolor
(sorghum)
Length = 118
Score = 52.0 bits (26), Expect = 6e-06
Identities = 29/30 (96%)
Strand = Plus / Plus
Query: 14 tgagaggctgaagctgccagcatgatctgg 43
||||||| ||||||||||||||||||||||
Sbjct: 6 tgagaggttgaagctgccagcatgatctgg 35
>RF00640;MIR167_1;ABXC01002438.1/140052-139788 4558:Sorghum
bicolor (sorghum)
Length = 265
Score = 50.1 bits (25), Expect = 2e-05
Identities = 28/29 (96%)
Strand = Plus / Plus
Query: 14 tgagaggctgaagctgccagcatgatctg 42
||||||| |||||||||||||||||||||
Sbjct: 6 tgagaggttgaagctgccagcatgatctg 34
>RF00640;MIR167_1;AASG02013372.1/3243-2901 3988:Ricinus communis
(castor bean)
Length = 343
Score = 48.1 bits (24), Expect = 1e-04
Identities = 30/32 (93%)
Strand = Plus / Plus
Query: 12 tttgagaggctgaagctgccagcatgatctgg 43
|||||||| ||||||||||||||||||||||
Sbjct: 4 tttgagagattgaagctgccagcatgatctgg 35
>RF00640;MIR167_1;ABXC01002259.1/3174-3066 4558:Sorghum bicolor
(sorghum)
Length = 109
Score = 46.1 bits (23), Expect = 4e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 gctgaagctgccagcatgatctg 42
|||||||||||||||||||||||
Sbjct: 12 gctgaagctgccagcatgatctg 34
>RF00640;MIR167_1;ABXC01000844.1/72139-72006 4558:Sorghum bicolor
(sorghum)
Length = 134
Score = 46.1 bits (23), Expect = 4e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 gctgaagctgccagcatgatctg 42
|||||||||||||||||||||||
Sbjct: 12 gctgaagctgccagcatgatctg 34
>RF00640;MIR167_1;AP003800.3/19613-19499 39947:Oryza sativa
Japonica Group
Length = 115
Score = 46.1 bits (23), Expect = 4e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 gctgaagctgccagcatgatctg 42
|||||||||||||||||||||||
Sbjct: 12 gctgaagctgccagcatgatctg 34
>RF00640;MIR167_1;AAAA02003942.1/33918-33790 39946:Oryza sativa
Indica Group
Length = 129
Score = 46.1 bits (23), Expect = 4e-04
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 20 gctgaagctgccagcatgatctg 42
|||||||||||||||||||||||
Sbjct: 12 gctgaagctgccagcatgatctg 34
