miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00704;MIR397;AC189186.2/40150-40047 51351:Brassica rapa subsp.
pekinensis
Length = 104
Score = 113 bits (57), Expect = 5e-25
Identities = 87/99 (87%), Gaps = 3/99 (3%)
Strand = Plus / Plus
Query: 8 gaacatcattgagtgcagcgttgatgtgatttacnnnnnnnn---attgttgaatggatt 64
|||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 6 gaacatcattgagtgcagcgttgatgtgatttacttatctttttcattgttgaatggatt 65
Query: 65 aaagcaatttacatcaatgttggctcaattatgtttttc 103
||||||||||||||||| |||||||||||||||||||||
Sbjct: 66 aaagcaatttacatcaacgttggctcaattatgtttttc 104
>RF00704;MIR397;AC012392.1/95144-95040 3702:Arabidopsis thaliana
(thale cress)
Length = 105
Score = 65.9 bits (33), Expect = 1e-10
Identities = 36/37 (97%)
Strand = Plus / Plus
Query: 3 tgaatgaacatcattgagtgcagcgttgatgtgattt 39
|||||||||||||||||||||||||||||||| ||||
Sbjct: 1 tgaatgaacatcattgagtgcagcgttgatgtaattt 37
Score = 46.1 bits (23), Expect = 9e-05
Identities = 48/55 (87%), Gaps = 1/55 (1%)
Strand = Plus / Plus
Query: 50 attgttgaatggattaaagcaatttacatcaatgttg-gctcaattatgtttttc 103
|||||||||||||||||| |||||| | || |||| |||||||||||||||||
Sbjct: 51 attgttgaatggattaaaagaatttataccagcgttgcgctcaattatgtttttc 105
>RF00704;MIR397;AL161536.2/165502-165396 3702:Arabidopsis thaliana
(thale cress)
Length = 107
Score = 58.0 bits (29), Expect = 2e-08
Identities = 35/37 (94%)
Strand = Plus / Plus
Query: 3 tgaatgaacatcattgagtgcagcgttgatgtgattt 39
|||||||||||||||||||||| ||||||||| ||||
Sbjct: 1 tgaatgaacatcattgagtgcatcgttgatgtaattt 37
>RF00704;MIR397;ABIM01007603.1/10199-10104 3649:Carica papaya
(papaya)
Length = 96
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 aacatcattgagtgcagcgttgatg 33
|||||||||||||||||||||||||
Sbjct: 7 aacatcattgagtgcagcgttgatg 31
>RF00704;MIR397;EF148834.1/45-164 3695:Populus trichocarpa x
Populus deltoides
Length = 120
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 aacatcattgagtgcagcgttgatg 33
|||||||||||||||||||||||||
Sbjct: 7 aacatcattgagtgcagcgttgatg 31
>RF00704;MIR397;CAAP02007812.1/4570-4691 29760:Vitis vinifera
Length = 122
Score = 50.1 bits (25), Expect = 6e-06
Identities = 25/25 (100%)
Strand = Plus / Plus
Query: 9 aacatcattgagtgcagcgttgatg 33
|||||||||||||||||||||||||
Sbjct: 7 aacatcattgagtgcagcgttgatg 31
>RF00704;MIR397;ABXC01002436.1/11519-11410 4558:Sorghum bicolor
(sorghum)
Length = 110
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 catcattgagtgcagcgttgatg 33
|||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatg 31
>RF00704;MIR397;AP003766.3/37038-37149 39947:Oryza sativa Japonica
Group
Length = 112
Score = 46.1 bits (23), Expect = 9e-05
Identities = 23/23 (100%)
Strand = Plus / Plus
Query: 11 catcattgagtgcagcgttgatg 33
|||||||||||||||||||||||
Sbjct: 9 catcattgagtgcagcgttgatg 31
