miRNEST 2.0, an integrative microRNA resource :: BLAST
BLASTN 2.2.20 [Feb-08-2009]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
>RF00943;MIR824;AC189548.2/18653-19283 51351:Brassica rapa subsp.
pekinensis
Length = 631
Score = 1015 bits (512), Expect = 0.0
Identities = 591/615 (96%), Gaps = 8/615 (1%)
Strand = Plus / Plus
Query: 1 tgtctttcatgtctagaccatttgtgagaagggattttttgtttgcaccgttcaccccac 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8 tgtctttcatgtctagaccatttgtgagaagggattttttgtttgcaccgttcaccccac 67
Query: 61 tttcaatctgtagtgagtattaaggaaaatagcttgttcaacatatcacactactctttt 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 68 tctcaatctgtagtgagtattaaggaaaatagcttgttcaacatatcacactactctttt 127
Query: 121 agaaacaatactatattttagatgcttttccagcttgatatacgttgttttgttatgtat 180
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 128 agaaacaaaactatattttagatgcttttccagcttgatatacgttgttttgttatgtat 187
Query: 181 atctgtattatcccggctaccaaaacgttaagaaataaggtgaacat---cctaaaacct 237
| ||||||| ||||||||||||||||||||||||||||||||||||| || |||||||
Sbjct: 188 acctgtattctcccggctaccaaaacgttaagaaataaggtgaacatctccccaaaacct 247
Query: 238 gcatccaattagaaaggtctaggtcacagatattacttgttatctcttgattaagctatt 297
||||||||||||||||||||||||||||| |||||||| ||||||| ||||||||||||
Sbjct: 248 gcatccaattagaaaggtctaggtcacagccattacttgctatctctcgattaagctatt 307
Query: 298 ttatttctatcagcatgatcagatcattcaggagttaagtataaactaaaatacattaag 357
|||||||||||| ||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 308 ttatttctatcatcatcatcagatcattcaggagttaagtataaaataaaatacattaag 367
Query: 358 tccattcatgacatttctggatgctgcatacataatattttccttgtttttggactatgc 417
||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct: 368 tccattcatgacatttctggatgctgcatacataatatt----ttgtttttggactatgc 423
Query: 418 cacacttcggacagacattttgcctaagagatgtcaaacctctgtctggagtgttagagg 477
||||||||||||||||||||| |||| |||||||||||||||||||||||||||||||||
Sbjct: 424 cacacttcggacagacatttttcctacgagatgtcaaacctctgtctggagtgttagagg 483
Query: 478 tatttcatgatagctaagaacttgaatcttgcactacttagctacactagattacttcat 537
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 484 tatttcatgatagctaagaacttgaatcttgcactacttagctacactagtttacttcat 543
Query: 538 agtaaataacttggggagtgggggaaggtgctgggttattattcccttctcatcgatggt 597
||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||
Sbjct: 544 agtaaataacttggggagt-ggggaaggtgctgggttattagtcccttctcatcgatggt 602
Query: 598 ctagatgtgcgaggt 612
|||||||||||||||
Sbjct: 603 ctagatgtgcgaggt 617
>RF00943;MIR824;FM164206.1/41-590 3702:Arabidopsis thaliana (thale
cress)
Length = 550
Score = 81.8 bits (41), Expect = 1e-14
Identities = 47/49 (95%)
Strand = Plus / Plus
Query: 1 tgtctttcatgtctagaccatttgtgagaagggattttttgtttgcacc 49
||||| |||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 8 tgtctctcatgtctagaccatttgtgagaagggagtttttgtttgcacc 56
Score = 71.9 bits (36), Expect = 1e-11
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 577 tattcccttctcatcgatggtctagatgtgcgaggt 612
||||||||||||||||||||||||||||||||||||
Sbjct: 501 tattcccttctcatcgatggtctagatgtgcgaggt 536
Score = 46.1 bits (23), Expect = 6e-04
Identities = 39/43 (90%), Gaps = 1/43 (2%)
Strand = Plus / Plus
Query: 79 attaaggaaaatagcttgttcaacatatcacactactctttta 121
|||||||||||||| | |||||||||| |||||||| ||||||
Sbjct: 99 attaaggaaaatag-tagttcaacataccacactaccctttta 140
>RF00943;MIR824;FM164204.1/27-664 3702:Arabidopsis thaliana (thale
cress)
Length = 638
Score = 73.8 bits (37), Expect = 3e-12
Identities = 46/49 (93%)
Strand = Plus / Plus
Query: 1 tgtctttcatgtctagaccatttgtgagaagggattttttgtttgcacc 49
||||| |||||||||||||||||||||||||||| ||||||||| ||||
Sbjct: 8 tgtctctcatgtctagaccatttgtgagaagggagtttttgtttacacc 56
Score = 71.9 bits (36), Expect = 1e-11
Identities = 36/36 (100%)
Strand = Plus / Plus
Query: 577 tattcccttctcatcgatggtctagatgtgcgaggt 612
||||||||||||||||||||||||||||||||||||
Sbjct: 589 tattcccttctcatcgatggtctagatgtgcgaggt 624
